BIOE 402. Medical Technology Assessment. 2 or 3 hours. Bioentrepreneur course. Assessment of medical technology in the context of commercialization. Objectives, competition, market share, funding, pricing, manufacturing, growth, and intellectual property; many issues unique to biomedical products. Course Information: 2 undergraduate hours. 3 graduate hours. Prerequisite(s): Junior standing or above and consent of the instructor.

“Bioinformatics” 특집을 내면서

In the 12 years since Dudgeon et al. (2006) reviewed major pressures on freshwater ecosystems, the biodiversity crisis in
the world’s lakes, reservoirs, rivers, streams and wetlands has deepened. While lakes, reservoirs and rivers cover only
2.3% of the Earth’s surface, these ecosystems host at least 9.5% of the Earth’s described animal species. Furthermore,
using the World Wide Fund for Nature’s Living Planet Index, freshwater population declines (83% between 1970 and
2014) continue to outpace contemporaneous declines in marine or terrestrial systems. The Anthropocene has brought
multiple new and varied threats that disproportionately impact freshwater systems. We document 12 emerging threats
to freshwater biodiversity that are either entirely new since 2006 or have since intensified: (i) changing climates; (ii)
e-commerce and invasions; (iii) infectious diseases; (iv) harmful algal blooms; (v) expanding hydropower; (vi) emerging
contaminants; (vii) engineered nanomaterials; (viii) microplastic pollution; (ix) light and noise; (x) freshwater salinisation;
(xi) declining calcium; and (xii) cumulative stressors. Effects are evidenced for amphibians, fishes, invertebrates, microbes,
plants, turtles and waterbirds, with potential for ecosystem-level changes through bottom-up and top-down processes.
In our highly uncertain future, the net effects of these threats raise serious concerns for freshwater ecosystems. However,
we also highlight opportunities for conservation gains as a result of novel management tools (e.g. environmental flows,
environmental DNA) and specific conservation-oriented actions (e.g. dam removal, habitat protection policies,managed
relocation of species) that have been met with varying levels of success.Moving forward, we advocate hybrid approaches
that manage fresh waters as crucial ecosystems for human life support as well as essential hotspots of biodiversity and
ecological function. Efforts to reverse global trends in freshwater degradation now depend on bridging an immense gap
between the aspirations of conservation biologists and the accelerating rate of species endangerment.

https://onlinelibrary.wiley.com/doi/pdf/10.1111/brv.12480

Emerging threats and persistent conservation challenges for freshwater biodiversity

The sustainability problems with regard to the production, distribution, and consumption of goods and services increasingly challenge the legitimacy of corporations. The literature distinguishes three strategies that corporations commonly employ to respond to legitimacy problems: adapt to external expectations, manipulate the perception of their stakeholders, or engage in a discourse with those who question their legitimacy. We discuss three approaches to determine the appropriate response strategy: one‐best‐way approach, contingency approach, and paradox approach. We argue that in the face of heterogeneous environments with conflicting demands, corporations that follow a paradox approach are likely to be more successful in preserving their legitimacy than those that adopt one of the other two approaches. We develop a theoretical framework for the application of different response strategies and explore the management of paradoxes by way of structural, contextual, or reflective means.

/pdf/managing-legitimacy-in-complex-and-heterogeneous-3cmfw1dxma.pdf

Managing Legitimacy in Complex and Heterogeneous Environments: Sustainable Development in a Globalized World

Flemish consumer attitudes towards more sustainable food choices

Dams contribute to water security, energy supply, and flood protection but also fragment habitats of freshwater species. Yet, a global species-level assessment of dam-induced fragmentation is lacking. Here, we assessed the degree of fragmentation of the occurrence ranges of ∼10,000 lotic fish species worldwide due to ∼40,000 existing large dams and ∼3,700 additional future large hydropower dams. Per river basin, we quantified a connectivity index (CI) for each fish species by combining its occurrence range with a high-resolution hydrography and the locations of the dams. Ranges of nondiadromous fish species were more fragmented (less connected) (CI = 73 ± 28%; mean ± SD) than ranges of diadromous species (CI = 86 ± 19%). Current levels of fragmentation were highest in the United States, Europe, South Africa, India, and China. Increases in fragmentation due to future dams were especially high in the tropics, with declines in CI of ∼20 to 40 percentage points on average across the species in the Amazon, Niger, Congo, Salween, and Mekong basins. Our assessment can guide river management at multiple scales and in various domains, including strategic hydropower planning, identification of species and basins at risk, and prioritization of restoration measures, such as dam removal and construction of fish bypasses.

https://www.pnas.org/content/pnas/117/7/3648.full.pdf

Impacts of current and future large dams on the geographic range connectivity of freshwater fish worldwide.

The Living Planet

The functions of anti-immunity and immunity are very similar: both repress the early functions acting on the same two operators, oL and oR. They differ only in their effect on the expression of the cI gene.

Two repressors in bacteriophage lambda.

Contemporary understanding of the evolution of life prefers the existence of mutually isolated lineages which are indifferent to each other, and are interconnected only through their common descent. We argue that a necessary precondition for biosemiotics is communication between all coevals sharing the biosphere. It will embrace mutual custody of existing communication pathways and codes, and of common evolutionary heritage

Towards a darwinian biosemiotics. life as mutual understanding

Bacteria grown on semi-solid media can build two types of multicellular structures, depending on the circumstances. Bodies (colonies) arise when a single clone is grown axenically (germ-free), whereas multispecies chimeric consortia contain monoclonal microcolonies of participants. Growth of an axenic colony, mutual interactions of colonies, and negotiation of the morphospace in consortial ecosystems are results of intricate regulatory and metabolic networks. Multicellular structures developed by Serratia sp. are characteristically shaped and colored, forming patterns that reflect their growth conditions (in particular medium composition and the presence of other bacteria). Building on our previous work, we developed a model system for studying ontogeny of multicellular bacterial structures formed by five Serratia sp. morphotypes of two species grown in either "germ-free" or "gnotobiotic" settings (i.e. in the presence of bacteria of other conspecific morphotype, other Serratia species, or E. coli). Monoclonal bodies show regular and reproducible macroscopic appearance of the colony, as well as microscopic pattern of its growing margin. Standard development can be modified in a characteristic and reproducible manner in close vicinity of other bacterial structures (or in the presence of their products). Encounters of colonies with neighbors of a different morphotype or species reveal relationships of dominance, cooperation, or submission; multiple interactions can be summarized in "rock – paper – scissors" network of interrelationships. Chimerical (mixed) plantings consisting of two morphotypes usually produced a “consortium” whose structure is consistent with the model derived from interaction patterns observed in colonies. Our results suggest that development of a bacterial colony can be considered analogous to embryogenesis in animals, plants, or fungi: to proceed, early stages require thorough insulation from the rest of the biosphere. Only later, the newly developing body gets connected to the ecological interactions in the biosphere. Mixed “anlagen” cannot accomplish the first, germ-free phase of development; hence, they will result in the consortium of small colonies. To map early development and subsequent interactions with the rest of the biospheric web, simplified gnotobiotic systems described here may turn to be of general use, complementing similar studies on developing multicellular eukaryots under germ-free or gnotobiotic conditions.

/pdf/developmental-plasticity-of-bacterial-colonies-and-consortia-jtwvwm92sn.pdf

Zdeněk Neubauer

Papers

The Living Planet

Two repressors in bacteriophage lambda.

Towards a darwinian biosemiotics. life as mutual understanding

Developmental plasticity of bacterial colonies and consortia in germ-free and gnotobiotic settings

The capacity of the bacterial host for the reproduction of the RNA phage f2