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Adam J. Bogdanove
Researcher at Cornell University
Publications - 116
Citations - 16667
Adam J. Bogdanove is an academic researcher from Cornell University. The author has contributed to research in topics: TAL effector & Effector. The author has an hindex of 43, co-authored 111 publications receiving 15043 citations. Previous affiliations of Adam J. Bogdanove include University of Minnesota & BASF SE.
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Journal ArticleDOI
Tools for TAL effector design and target prediction.
TL;DR: Targeting is complicated to an extent by a general requirement for thymine to precede the DNA target, a requirement of TALENs to bind paired opposing sites separated by a defined range of distances, differential contributions of different repeat types to overall affinity, and a polarity to mismatch tolerance.
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Protein-protein interactions in pathogen recognition by plants.
TL;DR: This article reviews the protein-protein interactions described in pathogen recognition by plants, and provides examples of how rapid future progress will hinge on the adoption of new and developing technologies.
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A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes
Young-Su Seo,Malinee Sriariyanun,Li Wang,Li Wang,Janice Pfeiff,Jirapa Phetsom,Ye Lin,Ki-Hong Jung,Hui-Hsien Chou,Adam J. Bogdanove,Pamela C. Ronald +10 more
TL;DR: Construction and validation of a two-genome microarray for the two pathovars of X. oryzae revealed that using representative strains, a greater number of Xoo genes than Xoc genes are differentially expressed in XOM2 relative to PSB, and that these include hrp genes and other genes important in interactions with rice.
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A Reference Genome Sequence for Giant Sequoia.
Alison Dawn Scott,Aleksey V. Zimin,Aleksey V. Zimin,Daniela Puiu,Rachael E. Workman,Monica Britton,Sumaira Zaman,Madison Caballero,Andrew C. Read,Adam J. Bogdanove,Emily Burns,Jill L. Wegrzyn,Winston Timp,Steven L. Salzberg,David B. Neale +14 more
TL;DR: This giant sequoia reference genome sequence represents the first genome sequenced in the Cupressaceae family, and lays a foundation for using genomic tools to aid in giant Sequoiadendron giganteum conservation and management.
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TAL Effector Specificity for base 0 of the DNA Target Is Altered in a Complex, Effector- and Assay-Dependent Manner by Substitutions for the Tryptophan in Cryptic Repeat –1
Erin L. Doyle,Aaron W. Hummel,Zachary L. Demorest,Colby G. Starker,Daniel F. Voytas,Philip Bradley,Adam J. Bogdanove,Adam J. Bogdanove +7 more
TL;DR: Generating TAL effector scaffolds with high activity that robustly accommodate sites without a T at position 0 may require larger scale re-engineering.