A
Aindrila Mukhopadhyay
Researcher at Lawrence Berkeley National Laboratory
Publications - 163
Citations - 8846
Aindrila Mukhopadhyay is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Pseudomonas putida & Desulfovibrio vulgaris. The author has an hindex of 44, co-authored 148 publications receiving 7190 citations. Previous affiliations of Aindrila Mukhopadhyay include University of California & Emory University.
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Journal ArticleDOI
Identification and microbial production of a terpene-based advanced biofuel
Pamela Peralta-Yahya,Mario Ouellet,Mario Ouellet,Rossana Chan,Rossana Chan,Aindrila Mukhopadhyay,Aindrila Mukhopadhyay,Jay D. Keasling,Jay D. Keasling,Jay D. Keasling,Taek Soon Lee,Taek Soon Lee +11 more
TL;DR: A framework for the identification of novel terpene-based advanced biofuels and the rapid engineering of microbial farnesyl diphosphate-overproducing platforms for the production of bio Fuels is presented.
Journal ArticleDOI
Engineering microbial biofuel tolerance and export using efflux pumps
Mary J. Dunlop,Zain Y. Dossani,Zain Y. Dossani,Heather L. Szmidt,Heather L. Szmidt,Hou Cheng Chu,Hou Cheng Chu,Taek Soon Lee,Taek Soon Lee,Jay D. Keasling,Jay D. Keasling,Jay D. Keasling,Masood Z. Hadi,Masood Z. Hadi,Aindrila Mukhopadhyay,Aindrila Mukhopadhyay +15 more
TL;DR: This work used bioinformatics to generate a list of all efflux pumps from sequenced bacterial genomes and prioritized a subset of targets for cloning, and efficiently distinguished pumps that improved survival and identified pumps that restored growth in the presence of biofuel.
Journal ArticleDOI
Engineering dynamic pathway regulation using stress-response promoters
Robert H. Dahl,Fuzhong Zhang,Jorge Alonso-Gutierrez,Jorge Alonso-Gutierrez,Edward E. K. Baidoo,Edward E. K. Baidoo,Tanveer S. Batth,Tanveer S. Batth,Alyssa M. Redding-Johanson,Alyssa M. Redding-Johanson,Christopher J. Petzold,Christopher J. Petzold,Aindrila Mukhopadhyay,Aindrila Mukhopadhyay,Taek Soon Lee,Taek Soon Lee,Paul D. Adams,Paul D. Adams,Paul D. Adams,Jay D. Keasling +19 more
TL;DR: This paper applied whole-genome transcript arrays to identify promoters that respond to the accumulation of toxic intermediates, and then used these promoters to control accumulation of the intermediate and improve the final titers of a desired product.
Journal ArticleDOI
Biofuel alternatives to ethanol: pumping the microbial well
Jeffrey L. Fortman,Jeffrey L. Fortman,Swapnil R. Chhabra,Swapnil R. Chhabra,Aindrila Mukhopadhyay,Aindrila Mukhopadhyay,Howard H. Chou,Howard H. Chou,Taek Soon Lee,Taek Soon Lee,Eric J. Steen,Eric J. Steen,Jay D. Keasling +12 more
TL;DR: Advances in microbial engineering for the production of other potential fuel molecules, using a variety of biosynthetic pathways are reviewed, to highlight additional options.
Journal ArticleDOI
Modular engineering of L-tyrosine production in Escherichia coli.
Darmawi Juminaga,Edward E. K. Baidoo,Alyssa M. Redding-Johanson,Tanveer S. Batth,Helcio Burd,Aindrila Mukhopadhyay,Christopher J. Petzold,Jay D. Keasling +7 more
TL;DR: A modular biosynthetic pathway for l-tyrosine production in E. coli MG1655 is designed and constructed by encoding the enzymes for converting erythrose-4-phosphate and phosphoenolpyruvate to l-Tyrosine on two plasmids by targeting targeted proteomics and metabolite profiling.