A
Akira Funahashi
Researcher at Keio University
Publications - 103
Citations - 5487
Akira Funahashi is an academic researcher from Keio University. The author has contributed to research in topics: SBML & Systems Biology Ontology. The author has an hindex of 23, co-authored 94 publications receiving 4977 citations. Previous affiliations of Akira Funahashi include Nankai University & Mie University.
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A comprehensive pathway map of epidermal growth factor receptor signaling
TL;DR: A comprehensive pathway map of EGFR signaling and other related pathways is presented and reveals that the overall architecture of the pathway is a bow‐tie (or hourglass) structure with several feedback loops.
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The Systems Biology Graphical Notation
Nicolas Le Novère,Michael Hucka,Huaiyu Mi,Stuart L. Moodie,Falk Schreiber,Falk Schreiber,Anatoly Sorokin,Emek Demir,Katja Wegner,Mirit I. Aladjem,Sarala M. Wimalaratne,Frank T Bergman,Ralph Gauges,Peter Ghazal,Hideya Kawaji,Lu Li,Yukiko Matsuoka,Alice Villéger,Sarah Elizabeth Boyd,Laurence Calzone,Mélanie Courtot,Ugur Dogrusoz,Tom C. Freeman,Akira Funahashi,Samik Ghosh,Akiya Jouraku,Sohoung Kim,Fedor A. Kolpakov,Augustin Luna,Sven Sahle,Esther Schmidt,Steven Watterson,Steven Watterson,Guanming Wu,Igor Goryanin,Douglas B. Kell,Chris Sander,Herbert M. Sauro,Jacky L. Snoep,Kurt W. Kohn,Hiroaki Kitano +40 more
TL;DR: The Systems Biology Graphical Notation (SBGN), a visual language developed by a community of biochemists, modelers and computer scientists, believes that it will foster efficient and accurate representation, visualization, storage, exchange and reuse of information on all kinds of biological knowledge.
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CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
TL;DR: IT is progressing from being hidden in the backwaters of software tinkering, to becoming a major strategic partner withindrug discovery environments, and that informatics promises to be a keyfactor for the future success of drugdiscovery.
Journal ArticleDOI
Using process diagrams for the graphical representation of biological networks.
TL;DR: The process diagram is a fully state transition–based diagram that can be translated into machine-readable forms such as SBML in a straightforward way and is supported by CellDesigner, a diagrammatic network editing software.
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CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks
TL;DR: In this article, the authors developed a modeling/simulating tool called CellDesigner, which can visualize, model, and simulate gene-regulatory and biochemical networks using SBML as a model-describing basis.