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Akira R. Kinjo
Researcher at Osaka University
Publications - 70
Citations - 1644
Akira R. Kinjo is an academic researcher from Osaka University. The author has contributed to research in topics: Protein structure prediction & Protein structure. The author has an hindex of 20, co-authored 69 publications receiving 1433 citations. Previous affiliations of Akira R. Kinjo include Graduate University for Advanced Studies & Kyushu University.
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Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation.
TL;DR: In general ID regions occupy a high fraction in TFs of eukaryotes, but not in prokaryotic TFs, and implications of this dichotomy are discussed in connection with their functional roles in transcriptional regulation and evolution.
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Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
Akira R. Kinjo,Hirofumi Suzuki,Reiko Yamashita,Yasuyo Ikegawa,Takahiro Kudou,Reiko Igarashi,Yumiko Kengaku,Hasumi Cho,Daron M. Standley,Atsushi Nakagawa,Haruki Nakamura +10 more
TL;DR: The Protein Data Bank Japan has recently developed PDB/RDF, PDB data in the Resource Description Framework (RDF) format, along with its ontology in the Web Ontology Language (OWL) based on the PDB mmCIF Exchange Dictionary.
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Neuro-symbolic representation learning on biological knowledge graphs.
Mona Alshahrani,Mohammad Asif Khan,Omar Maddouri,Omar Maddouri,Akira R. Kinjo,Núria Queralt-Rosinach,Robert Hoehndorf +6 more
TL;DR: This work develops a novel method for feature learning on biological knowledge graphs that combines symbolic methods, in particular knowledge representation using symbolic logic and automated reasoning, with neural networks to generate embeddings of nodes that encode for related information within knowledge graphs.
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Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures.
Akira R. Kinjo,Gert-Jan Bekker,Hirofumi Suzuki,Yuko Tsuchiya,Takeshi Kawabata,Yasuyo Ikegawa,Haruki Nakamura +6 more
TL;DR: The updated web user interfaces together with RESTful web services and the backend relational database that support the former are outlined and enhanced the connectivity of the wwPDB/RDF data by incorporating various external data resources.
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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)
Akira R. Kinjo,Gert-Jan Bekker,Hiroshi Wako,Shigeru Endo,Yuko Tsuchiya,Hiromu Sato,Hafumi Nishi,Kengo Kinoshita,Hirofumi Suzuki,Takeshi Kawabata,Masashi Yokochi,Takeshi Iwata,Naohiro Kobayashi,Toshimichi Fujiwara,Genji Kurisu,Haruki Nakamura +15 more
TL;DR: The new RDB PDBj Mine 2, the WebGL molecular viewer Molmil, the ProMode‐Elastic server for normal mode analysis, a virtual reality system for the eF‐site protein electrostatic molecular surfaces, the extensions of the Omokage search for molecular shape similarity, and the integration of PDBJ and BMRB searches are reported.