We present a new technique called “t-SNE” that visualizes high-dimensional data by giving each datapoint a location in a two or three-dimensional map. The technique is a variation of Stochastic Neighbor Embedding (Hinton and Roweis, 2002) that is much easier to optimize, and produces significantly better visualizations by reducing the tendency to crowd points together in the center of the map. t-SNE is better than existing techniques at creating a single map that reveals structure at many different scales. This is particularly important for high-dimensional data that lie on several different, but related, low-dimensional manifolds, such as images of objects from multiple classes seen from multiple viewpoints. For visualizing the structure of very large datasets, we show how t-SNE can use random walks on neighborhood graphs to allow the implicit structure of all of the data to influence the way in which a subset of the data is displayed. We illustrate the performance of t-SNE on a wide variety of datasets and compare it with many other non-parametric visualization techniques, including Sammon mapping, Isomap, and Locally Linear Embedding. The visualizations produced by t-SNE are significantly better than those produced by the other techniques on almost all of the datasets.

/pdf/visualizing-data-using-t-sne-2w1n304iq0.pdf

Visualizing Data using t-SNE

Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

Fast parallel algorithms for short-range molecular dynamics

https://axon.cs.byu.edu/~martinez/classes/678/Presentations/Yao.pdf

Extreme learning machine: Theory and applications

Probability Distributions.- Linear Models for Regression.- Linear Models for Classification.- Neural Networks.- Kernel Methods.- Sparse Kernel Machines.- Graphical Models.- Mixture Models and EM.- Approximate Inference.- Sampling Methods.- Continuous Latent Variables.- Sequential Data.- Combining Models.

Pattern Recognition and Machine Learning

Data Mining - Concepts and Techniques.

Underwater scene search turns out to be one of the most challenging topics in the underwater image analysis. In this paper, we present one underwater scene search scheme combined with similarity measure and sparse representation. The color histogram is first adopted to classify the candidate image patches for each kind of the underwater scene. At the same time, the feature similarity (FSIM) considers a full reference of the complementary terms, i.e., the phase congruency (PC) and the image gradient magnitude (GM), to reflect and generate the similarity map between the query image patch and the reference one. Sparse representation is then made full use of to represent the underwater image patches. It is shown in the simulation experiment that the proposed approach could achieve great performances in both robustness and effectiveness with good behaviors in underwater scene search tasks.

Underwater scene search scheme via similarity measure and sparse representation for autonomous underwater vehicle

Functional Variable Selection using Noise Variance Estimation

In this paper, a robust online sequential extreme learning machine (ROS-ELM) is proposed. It is based on the original OS-ELM with an adaptive selective ensemble framework. Two novel insights are proposed in this paper. First, a novel selective ensemble algorithm referred to as particle swarm optimization selective ensemble (PSOSEN) is proposed. Noting that PSOSEN is a general selective ensemble method which is applicable to any learning algorithms, including batch learning and online learning. Second, an adaptive selective ensemble framework for online learning is designed to balance the robustness and complexity of the algorithm. Experiments for both regression and classification problems with UCI data sets are carried out. Comparisons between OS-ELM, simple ensemble OS-ELM (EOS-ELM) and the proposed ROS-ELM empirically show that ROS-ELM significantly improves the robustness and stability.

Amaury Lendasse

Papers

Underwater scene search scheme via similarity measure and sparse representation for autonomous underwater vehicle

Functional Variable Selection using Noise Variance Estimation

Robust OS-ELM with a novel selective ensemble based on particle swarm optimization.

Developing chemometrics with the tools of information sciences (CHESS) - MASIT23

Proceedings of ELM-2016