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An V. Tat
Researcher at University of California, Davis
Publications - 3
Citations - 442
An V. Tat is an academic researcher from University of California, Davis. The author has contributed to research in topics: Gene & RNA-Seq. The author has an hindex of 3, co-authored 3 publications receiving 388 citations.
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Journal ArticleDOI
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
Daniel Koenig,José M. Jiménez-Gómez,Seisuke Kimura,Daniel Fulop,Daniel H. Chitwood,Lauren R. Headland,Ravi Kumar,Michael F. Covington,Upendra K. Devisetty,An V. Tat,Takayuki Tohge,Anthony Bolger,Korbinian Schneeberger,Stephan Ossowski,Christa Lanz,Guangyan Xiong,Mallorie Taylor-Teeples,Siobhan M. Brady,Markus Pauly,Detlef Weigel,Björn Usadel,Alisdair R. Fernie,Jie Peng,Neelima Sinha,Julin N. Maloof +24 more
TL;DR: High-throughput sequencing is used to identify changes in DNA sequence and gene expression that differentiate cultivated tomato and its wild relatives and identifies hundreds of candidate genes that have evolved new protein sequences or have changed expression levels in response to natural selection in wild tomato relatives.
Journal ArticleDOI
Shade avoidance components and pathways in adult plants revealed by phenotypic profiling.
Kazunari Nozue,An V. Tat,Upendra K. Devisetty,Matthew Robinson,Maxwell R. Mumbach,Yasunori Ichihashi,Saradadevi Lekkala,Julin N. Maloof +7 more
TL;DR: This work used over-representation analysis of shade-responsive genes, combined with previous annotation, to logically select 59 known and candidate novel mutants for phenotyping, and revealed shared and separate pathways for each shade avoidance response.
Journal ArticleDOI
Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.
TL;DR: An improved Brassica rapa transcriptome was constructed to detect novel transcripts and to improve the current genome annotation, useful for accurate mRNA abundance and detection of expression QTL (eQTLs) in mapping populations.