Isolated from a wide range of sources, the genus Paenibacillus comprises bacterial species relevant to humans, animals, plants, and the environment. Many Paenibacillus species can promote crop growth directly via biological nitrogen fixation, phosphate solubilization, production of the phytohormone indole-3-acetic acid (IAA), and release of siderophores that enable iron acquisition. They can also offer protection against insect herbivores and phytopathogens, including bacteria, fungi, nematodes, and viruses. This is accomplished by the production of a variety of antimicrobials and insecticides, and by triggering a hypersensitive defensive response of the plant, known as induced systemic resistance (ISR). Paenibacillus-derived antimicrobials also have applications in medicine, including polymyxins and fusaricidins, which are nonribosomal lipopeptides first isolated from strains of Paenibacillus polymyxa. Other useful molecules include exo-polysaccharides (EPS) and enzymes such as amylases, cellulases, hemicellulases, lipases, pectinases, oxygenases, dehydrogenases, lignin-modifying enzymes, and mutanases, which may have applications for detergents, food and feed, textiles, paper, biofuel, and healthcare. On the negative side, Paenibacillus larvae is the causative agent of American Foulbrood, a lethal disease of honeybees, while a variety of species are opportunistic infectors of humans, and others cause spoilage of pasteurized dairy products. This broad review summarizes the major positive and negative impacts of Paenibacillus: its realised and prospective contributions to agriculture, medicine, process manufacturing, and bioremediation, as well as its impacts due to pathogenicity and food spoilage. This review also includes detailed information in Additional files 1, 2, 3 for major known Paenibacillus species with their locations of isolation, genome sequencing projects, patents, and industrially significant compounds and enzymes. Paenibacillus will, over time, play increasingly important roles in sustainable agriculture and industrial biotechnology.

MOESM3 of Current knowledge and perspectives of Paenibacillus: a review

Applications of Remote Sensing in Agriculture - A Review

Synthetic pesticides in general, are highly toxic, persistent and their harmful residues contaminate crops, food commodities and pollute soils and groundwater. They adversely affect non-target organisms like pollinators, fish, birds, animals, and their excessive use results in increased resistance in pests. Phytochemical biopesticides on the other hand are less toxic, least persistent, environment friendly and safe to humans and non target organisms. Several phytochemical biopesticides like azadirachtin, nicotine, pyrethrins, rotenone, veratrum, annonins, rocaglamides, isobutylamides etc. have been successfully commercilalized in the past. In this review pesticidal products based on Madhuca indica (Mahua), Sapindus mukorossi (soapnut), Curcuma longa (turmeric), Pongamia glabra (karanja), Eupatorium adenophorum (Crofton weed), Tagetes erecta (marigold), Rheum emodi (Himalayan Rhubarb) and essential oil bearing plants have been discussed. Natural insecticide synergists derived from Anethum sowa and their semisynthetic derivatives have been used to prolong efficacy and counter resistance in insect pests.

Phytochemical biopesticides: some recent developments

Weeds are one of the major constraints in crop production affecting both yield and quality. The excessive and exclusive use of synthetic herbicides for their management is increasing the development of herbicide-resistant weeds and is provoking risks for the environment and human health. Therefore, the development of new herbicides with multitarget-site activity, new modes of action and low impact on the environment and health are badly needed. The study of plant-plant interactions through the release of secondary metabolites could be a starting point for the identification of new molecules with herbicidal activity. Essential oils (EOs) and their components, mainly terpenoids, as pure natural compounds or in mixtures, because of their structural diversity and strong phytotoxic activity, could be good candidates for the development of new bioherbicides or could serve as a basis for the development of new natural-like low impact synthetic herbicides. EOs and terpenoids have been largely studied for their phytotoxicity and several evidences on their modes of action have been highlighted in the last decades through the use of integrated approaches. The review is focused on the knowledge concerning the phytotoxicity of these molecules, their putative target, as well as their potential mode of action.

https://www.mdpi.com/2223-7747/9/11/1571/pdf

Phytotoxic Effects and Mechanism of Action of Essential Oils and Terpenoids

Influence of plants and environmental variables on the diversity of soil microbial communities in the Yellow River Delta Wetland, China.

Ecological intensification of rice production through rice-fish co-culture

Distinctive strains of Pantoea are used as soil inoculants for their ability to promote plant growth. Pantoea agglomerans strain C1, previously isolated from the phyllosphere of lettuce, can produce indole-3-acetic acid (IAA), solubilize phosphate, and inhibit plant pathogens, such as Erwinia amylovora. In this paper, the complete genome sequence of strain C1 is reported. In addition, experimental evidence is provided on how the strain tolerates arsenate As (V) up to 100 mM, and on how secreted metabolites like IAA and siderophores act as biostimulants in tomato cuttings. The strain has a circular chromosome and two prophages for a total genome of 4,846,925-bp, with a DNA G+C content of 55.2%. Genes related to plant growth promotion and biocontrol activity, such as those associated with IAA and spermidine synthesis, solubilization of inorganic phosphate, acquisition of ferrous iron, and production of volatile organic compounds, siderophores and GABA, were found in the genome of strain C1. Genome analysis also provided better understanding of the mechanisms underlying strain resistance to multiple toxic heavy metals and transmission of these genes by horizontal gene transfer. Findings suggested that strain C1 exhibits high biotechnological potential as plant growth-promoting bacterium in heavy metal polluted soils.

https://www.mdpi.com/2076-2607/8/2/153/pdf

Genome Sequencing of Pantoea agglomerans C1 Provides Insights into Molecular and Genetic Mechanisms of Plant Growth-Promotion and Tolerance to Heavy Metals.

The adoption of precision agriculture techniques for N management has the potential for improving agronomic, economic and environmental efficiency in the use of such input. The present work was aimed at testing a simplified N balance method for the prescription of N fertilisation in uniform management zones defined from information on measured soil properties on grain maize in central Italy. The results of this preliminary experience show that the application of the N balance prescription map did not bring to significant differences, from a uniform N fertilisation, in terms of grain yield, economic return above N cost and nitrate content in the soil profile at the end of the growing season. However, the adoption of the prescribed N fertilisation strategy for the whole field would have caused a limited saving in the amount of fertiliser employed, quantified at about 10 kg N ha-1.

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Nitrogen fertilisation management in precision agriculture: a preliminary application example on maize

The indiscriminate use of synthetic chemical compounds for weed control has been often responsible of damage to both the environment and the human health. To challenge these problems, in the last years research has increased its effort to find out alternative farming strategies. A feasible alternative could be the identification of natural substances with allelopathic effects for the realization of natural herbicides. Some research has already highlighted the possibility of using essential oils, extracted from aromatic plants, for weed control. The advantage in the utilization of such natural compounds is the quickly breaking down process into the environment and so the possible application in sustainable agriculture like organic farming. Objective of this research was the evaluation of the inhibition effect exerted by the essential oils of cinnamon, peppermint and lavender on seeds germination of some of the most common weeds species of the Mediterranean environment (pigweed, wild mustard and ryegrass). The results have highlighted a control in the weeds germination. Among the essential oils tested, cinnamon oil has exerted the highest inhibition effect compared with lavender and peppermint ones. The dicotyledonous species have been more susceptible compared with the monocotyledonous, even if it has been recorded only for redroot pigweed a dose able to inhibit totally the seed germination.

/pdf/use-of-essential-oils-of-cinnamon-lavender-and-peppermint-qbcwg4uurp.pdf

Use of Essential Oils of Cinnamon, Lavender and Peppermint for Weed Control

There have been very few studies on the effects of plant competition on the rhizosphere bacterial community. To investigate the impacts of intra- and interspecific plant competition, we analyzed the responses of rhizosphere bacterial communities to plant density as determined by 16S rRNA gene targeted sequencing. We included five weedy plant species growing in field soil in monocultures and mixed cultures at three densities in a greenhouse experiment. The rhizosphere bacterial community of each species changed more with density in a mixture of all five plant species than in monocultures, so intra- and interspecific plant competition had different effects on the bacterial community. For the dominant plant competitor, Centaurea cyanus, neither intra- nor interspecific competition had major effects on the composition of its rhizosphere bacterial communities. In contrast, the bacterial communities of the weakest competitor, Trifolium repens, were affected differently by intra- and interspecific competition. During increasing intraspecific competition T. repens maintained a highly specialized bacterial community dominated by Rhizobium; while during interspecific competition, the relative abundance of Rhizobium declined while other nitrogen fixing and potentially plant growth promoting taxa became more abundant. Contrary to previous observations made for soil microbial communities, the bacterial rhizosphere community of the weakest competitor did not become more similar to that of the dominant species. Thus, the process of competition, as well as the plant species themselves, determined the rhizosphere bacterial community. Our results emphasize the role of plant-plant interactions for rhizosphere bacterial communities. These effects may feedback to affect plant-plant interactions, and this is an important hypothesis for future research.

/pdf/effects-of-intra-and-interspecific-plant-density-on-18jhj9qed5.pdf

Andrea Cavalieri

Papers

Ecological intensification of rice production through rice-fish co-culture

Genome Sequencing of Pantoea agglomerans C1 Provides Insights into Molecular and Genetic Mechanisms of Plant Growth-Promotion and Tolerance to Heavy Metals.

Nitrogen fertilisation management in precision agriculture: a preliminary application example on maize

Use of Essential Oils of Cinnamon, Lavender and Peppermint for Weed Control

Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities.