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Andrea Koblížková
Researcher at Academy of Sciences of the Czech Republic
Publications - 28
Citations - 1825
Andrea Koblížková is an academic researcher from Academy of Sciences of the Czech Republic. The author has contributed to research in topics: Satellite DNA & Genome. The author has an hindex of 20, co-authored 25 publications receiving 1427 citations.
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Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution
Zhiyun Gong,Zhiyun Gong,Yufeng Wu,Andrea Koblížková,Giovana Augusta Torres,Giovana Augusta Torres,Kai Wang,Marina Iovene,Pavel Neumann,Wenli Zhang,Petr Novák,C. Robin Buell,Jiří Macas,Jiming Jiang +13 more
TL;DR: The presence of two distinct types of centromeres, coupled with the boom-and-bust cycles of centromeric satellite repeats in Solanum species, suggests that repeat-based centromere evolution can rapidly evolve from neocentromeres by de novo amplification and insertion of satellite repeat repeats in the CENH3 domains.
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TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
TL;DR: A novel computational pipeline that circumvents the problem of difficult to assemble satellite DNA characterization by detecting satellite repeats directly from unassembled short reads by employing graph-based sequence clustering to identify groups of reads that represent repetitive elements.
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Plant centromeric retrotransposons: a structural and cytogenetic perspective
Pavel Neumann,Alice Navrátilová,Andrea Koblížková,Eduard Kejnovský,Eva Hřibová,Roman Hobza,Alex Widmer,Jaroslav Doležel,Jiří Macas +8 more
TL;DR: Comprehensive analysis of the CRM clade elements showed that genuinely centromeric retrotransposons represent an active component of centromeres of a wide range of angiosperm species, implying that they play an important role in plant centromere evolution.
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In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.
Jiří Macas,Petr Novák,Jaume Pellicer,Jana Čížková,Andrea Koblížková,Pavel Neumann,Iva Fuková,Jaroslav Doležel,Laura J. Kelly,Ilia J. Leitch +9 more
TL;DR: Large-scale comparative analysis of repeats in 23 species from four genera of the monophyletic legume tribe Fabeae, representing a 7.6-fold variation in genome size, provided a proof of concept for the approach combining recent developments in sequencing and bioinformatics to perform comparative analyses of repetitive DNAs in a large number of non-model species without the need to assemble their genomes.
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Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains
Pavel Neumann,Alice Navrátilová,Elizabeth Schroeder-Reiter,Andrea Koblížková,Veronika Steinbauerová,Eva Chocholová,Petr Novák,Gerhard Wanner,Jiří Macas +8 more
TL;DR: It is shown that pea (Pisum sativum) chromosomes exhibit remarkably long primary constrictions that contain 3–5 explicit CenH3-containing regions, a novelty in centromere organization.