This paper reviews the current knowledge of microbial processes affecting C sequestration in agroecosystems. The microbial contribution to soil C storage is directly related to microbial community dynamics and the balance between formation and degradation of microbial byproducts. Soil microbes also indirectly influence C cycling by improving soil aggregation, which physically protects soil organic matter (SOM). Consequently, the microbial contribution to C sequestration is governed by the interactions between the amount of microbial biomass, microbial community structure, microbial byproducts, and soil properties such as texture, clay mineralogy, pore-size distribution, and aggregate dynamics. The capacity of a soil to protect microbial biomass and microbially derived organic matter (MOM) is directly and/or indirectly (i.e., through physical protection by aggregates) related to the reactive properties of clays. However, the stabilization of MOM in the soil is also related to the efficiency with which microorganisms utilize substrate C and the chemical nature of the byproducts they produce. Crop rotations, reduced or no-tillage practices, organic farming, and cover crops increase total microbial biomass and shift the community structure toward a more fungal-dominated community, thereby enhancing the accumulation of MOM. A quantitative and qualitative improvement of SOM is generally observed in agroecosystems favoring a fungal-dominated community, but the mechanisms leading to this improvement are not completely understood. Gaps within our knowledge on MOM-C dynamics and how they are related to soil properties and agricultural practices are identified.

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Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems

Since its commercial introduction in 1974, glyphosate [N-(phosphonomethyl)glycine] has become the dominant herbicide worldwide. There are several reasons for its success. Glyphosate is a highly effective broad-spectrum herbicide, yet it is very toxicologically and environmentally safe. Glyphosate translocates well, and its action is slow enough to take advantage of this. Glyphosate is the only herbicide that targets 5-enolpyruvyl-shikimate-3-phosphate synthase (EPSPS), so there are no competing herbicide analogs or classes. Since glyphosate became a generic compound, its cost has dropped dramatically. Perhaps the most important aspect of the success of glyphosate has been the introduction of transgenic, glyphosate-resistant crops in 1996. Almost 90% of all transgenic crops grown worldwide are glyphosate resistant, and the adoption of these crops is increasing at a steady pace. Glyphosate/glyphosate-resistant crop weed management offers significant environmental and other benefits over the technologies that it replaces. The use of this virtually ideal herbicide is now being threatened by the evolution of glyphosate-resistant weeds. Adoption of resistance management practices will be required to maintain the benefits of glyphosate technologies for future generations. Copyright © 2008 Society of Chemical Industry

Glyphosate: a once-in-a-century herbicide.

The paper focuses on conservation agriculture (CA), defined as minimal soil disturbance (no-till, NT) and permanent soil cover (mulch) combined with rotations, as a more sustainable cultivation system for the future. Cultivation and tillage play an important role in agriculture. The benefits of tillage in agriculture are explored before introducing conservation tillage (CT), a practice that was borne out of the American dust bowl of the 1930s. The paper then describes the benefits of CA, a suggested improvement on CT, where NT, mulch and rotations significantly improve soil properties and other biotic factors. The paper concludes that CA is a more sustainable and environmentally friendly management system for cultivating crops. Case studies from the rice-wheat areas of the Indo-Gangetic Plains of South Asia and the irrigated maize-wheat systems of Northwest Mexico are used to describe how CA practices have been used in these two environments to raise production sustainably and profitably. Benefits in terms of greenhouse gas emissions and their effect on global warming are also discussed. The paper concludes that agriculture in the next decade will have to sustainably produce more food from less land through more efficient use of natural resources and with minimal impact on the environment in order to meet growing population demands. Promoting and adopting CA management systems can help meet this goal.

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The role of conservation agriculture in sustainable agriculture.

The long-term stabilization of soil organic matter (SOM) in tropical and temperate regions is mediated by soil biota (e.g. fungi, bacte- ria, roots and earthworms), soil structure (e.g. aggregation) and their interactions. On average, soil C turnover was twice as fast in tropical com- pared with temperate regions, but no major differences were observed in SOM quality between the two regions. Probably due to the soil mineralogy dominated by 1:1 clay minerals and oxides in tropical regions, we found a higher aggregate stability, but a lower correlation between C contents and aggregate stability in tropical soils. In addition, a smaller amount of C associated with clay and silt particles was observed in tro- pical versus temperate soils. In both tropical and temperate soils, a general increase in C levels (≈ 325 ± 113 kg C·ha -1 ·yr -1 ) was observed under no-tillage compared with conventional tillage. On average, in temperate soils under no-tillage, compared with conventional tillage, CH4 uptake (≈ 0.42 ± 0.10 kg C-CH4·ha -1 ·yr -1

/pdf/soil-organic-matter-biota-and-aggregation-in-temperate-and-4fy8bn1320.pdf

Soil organic matter, biota and aggregation in temperate and tropical soils - Effects of no-tillage

Soil quality is a composite measure of both a soil’s ability to function and how well it functions, relative to a specific use. Soil quality can be assessed using a minimum data set comprising soil attributes such as texture, organic matter, pH, bulk density, and rooting depth. Soil organic matter has particular significance for soil quality as it can influence many different soil properties including other attributes of the minimum data set. Assessment of soil organic matter is a valuable step towards identifying the overall quality of a soil and may be so informative as to be included in minimum data sets used to evaluate the world’s soils.In this review, soil organic matter is considered to encompass a set of attributes rather than being a single entity. Included among the attributes and discussed here are total soil organic carbon and nitrogen, light fraction and macroorganic (particulate) matter, mineralizable carbon and nitrogen, microbial biomass, soil carbohydrates and enzymes. These attributes ar...

Towards a minimum data set to assess soil organic matter quality in agricultural soils

The frequency of gene flow from Brassica napus L. (canola) to four wild relatives, Brassica rapa L., Raphanus raphanistrum L., Sinapis arvensis L. and Erucastrum gallicum (Willd.) O.E. Schulz, was assessed in greenhouse and/or field experiments, and actual rates measured in commercial fields in Canada. Various marker systems were used to detect hybrid individuals: herbicide resistance traits (HR), green fluorescent protein marker (GFP), species-specific amplified fragment length polymorphisms (AFLPs) and ploidy level. Hybridization between B. rapa and B. napus occurred in two field experiments (frequency approximately 7%) and in wild populations in commercial fields (approximately 13.6%). The higher frequency in commercial fields was most likely due to greater distance between B. rapa plants. All F1 hybrids were morphologically similar to B. rapa, had B. napus- and B. rapa-specific AFLP markers and were triploid (AAC, 2n = 29 chromosomes). They had reduced pollen viability (about 55%) and segregated for both self-incompatible and self-compatible individuals (the latter being a B. napus trait). In contrast, gene flow between R. raphanistrum and B. napus was very rare. A single R. raphanistrum × B. napus F1 hybrid was detected in 32,821 seedlings from the HR B. napus field experiment. The hybrid was morphologically similar to R. raphanistrum except for the presence of valves, a B. napus trait, in the distorted seed pods. It had a genomic structure consistent with the fusion of an unreduced gamete of R. raphanistrum and a reduced gamete of B. napus (RrRrAC, 2n = 37), both B. napus- and R. raphanistrum-specific AFLP markers, and had <1% pollen viability. No hybrids were detected in the greenhouse experiments (1,534 seedlings), the GFP field experiment (4,059 seedlings) or in commercial fields in Quebec and Alberta (22,114 seedlings). No S. arvensis or E. gallicum × B. napus hybrids were detected (42,828 and 21,841 seedlings, respectively) from commercial fields in Saskatchewan. These findings suggest that the probability of gene flow from transgenic B. napus to R. raphanistrum, S. arvensis or E. gallicum is very low (<2–5 × 10–5). However, transgenes can disperse in the environment via wild B. rapa in eastern Canada and possibly via commercial B. rapa volunteers in western Canada.

Hybridization between transgenic Brassica napus L. and its wild relatives: Brassica rapa L., Raphanus raphanistrum L., Sinapis arvensis L., and Erucastrum gallicum (Willd.) O.E. Schulz

The existence of transgenic hybrids resulting from transgene escape from genetically modified (GM) crops to wild or weedy relatives is well documented but the fate of the transgene over time in recipient wild species populations is still relatively unknown. This is the first report of the persistence and apparent introgression, i.e. stable incorporation of genes from one differentiated gene pool into another, of an herbicide resistance transgene from Brassica napus into the gene pool of its weedy relative, Brassica rapa, monitored under natural commercial field conditions. Hybridization between glyphosate-resistant [herbicide resistance (HR)] B. napus and B. rapa was first observed at two Quebec sites, Ste Agathe and St Henri, in 2001. B. rapa populations at these two locations were monitored in 2002, 2003 and 2005 for the presence of hybrids and transgene persistence. Hybrid numbers decreased over the 3-year period, from 85 out of ~200 plants surveyed in 2002 to only five out of 200 plants in 2005 (St Henri site). Most hybrids had the HR trait, reduced male fertility, intermediate genome structure, and presence of both species-specific amplified fragment length polymorphism markers. Both F1 and backcross hybrid generations were detected. One introgressed individual, i.e. with the HR trait and diploid ploidy level of B. rapa, was observed in 2005. The latter had reduced pollen viability but produced ~480 seeds. Forty-eight of the 50 progeny grown from this plant were diploid with high pollen viability and 22 had the transgene (1:1 segregation). These observations confirm the persistence of the HR trait over time. Persistence occurred over a 6-year period, in the absence of herbicide selection pressure (with the exception of possible exposure to glyphosate in 2002), and in spite of the fitness cost associated with hybridization.

Do escaped transgenes persist in nature? The case of an herbicide resistance transgene in a weedy Brassica rapa population

Crop rotations and tillage practices can modify not only the total amount of organic matter (OM) in soils but also its composition. The objective of this study was to determine the changes in total organic C, microbial biomass C (MBC), carbohydrates and alkaline phosphatase activity induced by 4 yr of different rotation and tillage combinations on a Kamouraska clay in La Pocatiere, Quebec. Two rotations (continuous barley (Hordeum vulgare L.) versus a 2-yr barley–red clover (Trifolium pratense L.) rotation) and three tillage treatments (moldboard plowing (MP), chisel plowing (CP) and no-tillage (NT)) were compared in a split-plot design. Total organic C was affected by the tillage treatments but not by the rotations. In the top soil layer (0–7.5 cm), NT and CP treatments had C contents 20% higher than the MP treatment. In the same soil layer, MBC averaged 300 mg C kg−1 in the MP treatment and up to 600 mg C kg−1 in the NT soil. Hot-water-extractable and acid-hydrolyzable carbohydrates were on average 40% ...

Microbial and biochemical changes induced by rotation and tillage in a soil under barley production

This review examines some agronomic, economic, and environmental impacts of herbicide-resistant (HR) canola, soybean, corn, and wheat in Canada after 10 yr of growing HR cultivars. The rapid adopti...

A decade of herbicide-resistant crops in Canada

Crop rotations and tillage practices can alter the structure of die soil through their effects on soil disturbance and mixing and on organic matter (OM) accumulation and mineralization. The objective of this study was to determine the changes in soil water-stable aggregation induced by 4 yr of different rotation and tillage practices on a Kamouraska clay at La Pocatiere, Quebec. The influence of soil water content (WC) at time of sampling and of different biological and biochemical properties on soil aggregation was also examined. Two rotations (continuous barley (Hordeum vulgare L.) vs. a 2-yr barley–red clover (Trifolium pratense L.) rotation) and three tillage treatments (moldboard plowing (MP) chisel plowing (CP) and no-tillage (NT)) were compared in a split-plot design. Measurements of the size distribution of water-stable aggregates were made on surface (0–7.5 cm) soil samples taken periodically during the 4-yr period. Rotations had no effect on soil aggregation. The mean-weight diameter (MWD) of wa...

Anne Légère

Papers

Hybridization between transgenic Brassica napus L. and its wild relatives: Brassica rapa L., Raphanus raphanistrum L., Sinapis arvensis L., and Erucastrum gallicum (Willd.) O.E. Schulz

Do escaped transgenes persist in nature? The case of an herbicide resistance transgene in a weedy Brassica rapa population

Microbial and biochemical changes induced by rotation and tillage in a soil under barley production

A decade of herbicide-resistant crops in Canada

Early changes in water-stable aggregation induced by rotation and tillage in a soil under barley production