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Benjamin D. Pedigo
Researcher at Johns Hopkins University
Publications - 15
Citations - 129
Benjamin D. Pedigo is an academic researcher from Johns Hopkins University. The author has contributed to research in topics: Computer science & Connectome. The author has an hindex of 5, co-authored 10 publications receiving 56 citations. Previous affiliations of Benjamin D. Pedigo include University of Washington.
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Journal ArticleDOI
The connectome of an insect brain
Michael James Winding,Benjamin D. Pedigo,Christopher L. Barnes,Heather G. Patsolic,Youngser Park,Tom Kazimiers,Akira Fushiki,Ingrid Andrade,Avinash Khandelwal,Javier Valdes-Aleman,Feng Li,Nadine Randel,Elizabeth Barsotti,Ana Correia,Richard D. Fetter,Volker Hartenstein,Carey E. Priebe,Joshua T. Vogelstein,Albert Cardona,Marta Zlatic +19 more
TL;DR: In this paper , the synaptic-resolution connectome of an insect brain (Drosophila larva) with rich behavior, including learning, value-computation, and action-selection, comprising 3,013 neurons and 544,000 synapses.
Journal ArticleDOI
Connectal coding: discovering the structures linking cognitive phenotypes to individual histories
Joshua T. Vogelstein,Eric W. Bridgeford,Benjamin D. Pedigo,Jaewon Chung,Keith Levin,Brett D. Mensh,Carey E. Priebe +6 more
TL;DR: This work proposes a formal statistical framework for connectal coding and demonstrates its utility in several applications spanning experimental modalities and phylogeny.
Journal Article
GraSPy: Graph Statistics in Python
Jaewon Chung,Benjamin D. Pedigo,Eric W. Bridgeford,Bijan Varjavand,Hayden S. Helm,Joshua T. Vogelstein +5 more
TL;DR: GraSPy, a Python library devoted to statistical inference, machine learning, and visualization of random graphs and graph populations, provides flexible and easy-to-use algorithms for analyzing and understanding graphs with a scikit-learn compliant API.
Journal ArticleDOI
Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics
Adam S. Charles,Benjamin Falk,Nicholas L. Turner,Talmo D. Pereira,Daniel J. Tward,Benjamin D. Pedigo,Jaewon Chung,Randal Burns,Satrajit S. Ghosh,Satrajit S. Ghosh,Justus M. Kebschull,Justus M. Kebschull,William Silversmith,Joshua T. Vogelstein +13 more
TL;DR: Brain science can be further democratized by harnessing the power of community-driven tools, which both are built by and benefit from many different people with different backgrounds and expertise, and enables collaborations across previously siloed communities.
Journal ArticleDOI
Hypoxia weakens mussel attachment by interrupting DOPA cross-linking during adhesive plaque curing.
TL;DR: AFM imaging of the plaque cuticle found that plaques cured in hypoxia had regions of lower stiffness throughout, indicative of reductions in DOPA cross-linking between adhesive proteins, which could aid in the design of better synthetic adhesives.