Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

Fast parallel algorithms for short-range molecular dynamics

Data Mining Practical Machine Learning Tools and Techniques

/pdf/a-break-in-the-clouds-towards-a-cloud-definition-svovsw1r5a.pdf

A Break in the Clouds: Towards a Cloud Definition

The rapid uptake of mobile devices and the rising popularity of mobile applications and services pose unprecedented demands on mobile and wireless networking infrastructure. Upcoming 5G systems are evolving to support exploding mobile traffic volumes, real-time extraction of fine-grained analytics, and agile management of network resources, so as to maximize user experience. Fulfilling these tasks is challenging, as mobile environments are increasingly complex, heterogeneous, and evolving. One potential solution is to resort to advanced machine learning techniques, in order to help manage the rise in data volumes and algorithm-driven applications. The recent success of deep learning underpins new and powerful tools that tackle problems in this space. In this paper, we bridge the gap between deep learning and mobile and wireless networking research, by presenting a comprehensive survey of the crossovers between the two areas. We first briefly introduce essential background and state-of-the-art in deep learning techniques with potential applications to networking. We then discuss several techniques and platforms that facilitate the efficient deployment of deep learning onto mobile systems. Subsequently, we provide an encyclopedic review of mobile and wireless networking research based on deep learning, which we categorize by different domains. Drawing from our experience, we discuss how to tailor deep learning to mobile environments. We complete this survey by pinpointing current challenges and open future directions for research.

/pdf/deep-learning-in-mobile-and-wireless-networking-a-survey-ct8cy2kuqi.pdf

Deep Learning in Mobile and Wireless Networking: A Survey

The Internet of Things (IoT) integrates billions of smart devices that can communicate with one another with minimal human intervention. IoT is one of the fastest developing fields in the history of computing, with an estimated 50 billion devices by the end of 2020. However, the crosscutting nature of IoT systems and the multidisciplinary components involved in the deployment of such systems have introduced new security challenges. Implementing security measures, such as encryption, authentication, access control, network and application security for IoT devices and their inherent vulnerabilities is ineffective. Therefore, existing security methods should be enhanced to effectively secure the IoT ecosystem. Machine learning and deep learning (ML/DL) have advanced considerably over the last few years, and machine intelligence has transitioned from laboratory novelty to practical machinery in several important applications. Consequently, ML/DL methods are important in transforming the security of IoT systems from merely facilitating secure communication between devices to security-based intelligence systems. The goal of this work is to provide a comprehensive survey of ML methods and recent advances in DL methods that can be used to develop enhanced security methods for IoT systems. IoT security threats that are related to inherent or newly introduced threats are presented, and various potential IoT system attack surfaces and the possible threats related to each surface are discussed. We then thoroughly review ML/DL methods for IoT security and present the opportunities, advantages and shortcomings of each method. We discuss the opportunities and challenges involved in applying ML/DL to IoT security. These opportunities and challenges can serve as potential future research directions.

A Survey of Machine and Deep Learning Methods for Internet of Things (IoT) Security

A Botnet can be conceived as a group of compromised computers which can be controlled remotely to execute coordinated attacks or commit fraudulent acts. The fact that Botnets keep continuously evolving means that traditional detection approaches are always one step behind. Recently, the behavior analysis of network traffic has arisen as a way to tackle the Botnet detection problem. The behavioral analysis approach aims to look at the common patterns that Botnets follow across their life cycle, trying to generalize in order to become capable of detecting unseen Botnet traffic. This work provides an analysis of the viability of Recurrent Neural Networks (RNN) to detect the behavior of network traffic by modeling it as a sequence of states that change over time. The recent success applying RNN to sequential data problems makes them a viable candidate on the task of sequence behavior analysis. The performance of a RNN is evaluated considering two main issues, the imbalance of network traffic and the optimal length of sequences. Both issues have a great impact in potentially real-life implementation. Evaluation is performed using a stratified k-fold cross validation and an independent test is conducted on not previously seen traffic belonging to a different Botnet. Preliminary results reveal that the RNN is capable of classifying the traffic with a high attack detection rate and an very small false alarm rate, which makes it a potential candidate for implementation and deployment on real-world scenarios. However, experiments exposed the fact that RNN detection models have problems for dealing with traffic behaviors not easily differentiable as well as some particular cases of imbalanced network traffic.

An analysis of Recurrent Neural Networks for Botnet detection behavior

Automatic network intrusion detection: Current techniques and open issues

In the past years, several support vector machines (SVM) novelty detection approaches have been applied on the network intrusion detection field. The main advantage of these approaches is that they can characterize normal traffic even when trained with datasets containing not only normal traffic but also a number of attacks. Unfortunately, these algorithms seem to be accurate only when the normal traffic vastly outnumbers the number of attacks present in the dataset. A situation which can not be always hold. This work presents an approach for autonomous labeling of normal traffic as a way of dealing with situations where class distribution does not present the imbalance required for SVM algorithms. In this case, the autonomous labeling process is made by SNORT, a misuse-based intrusion detection system. Experiments conducted on the 1998 DARPA dataset show that the use of the proposed autonomous labeling approach not only outperforms existing SVM alternatives but also, under some attack distributions, obtains improvements over SNORT itself.

An autonomous labeling approach to support vector machines algorithms for network traffic anomaly detection

https://users.exa.unicen.edu.ar/~cmateos/files/journals/pacini2014-cee.pdf

Software Survey: Distributed job scheduling based on Swarm Intelligence: A survey

The Cloud Computing paradigm focuses on the provisioning of reliable and scalable infrastructures (Clouds) delivering execution and storage services. The paradigm, with its promise of virtually infinite resources, seems to suit well in solving resource greedy scientific computing problems. The goal of this work is to study private Clouds to execute scientific experiments coming from multiple users, i.e., our work focuses on the Infrastructure as a Service (IaaS) model where custom Virtual Machines (VM) are launched in appropriate hosts available in a Cloud. Then, correctly scheduling Cloud hosts is very important and it is necessary to develop efficient scheduling strategies to appropriately allocate VMs to physical resources. The job scheduling problem is however NP-complete, and therefore many heuristics have been developed. In this work, we describe and evaluate a Cloud scheduler based on Ant Colony Optimization (ACO). The main performance metrics to study are the number of serviced users by the Cloud and the total number of created VMs in online (non-batch) scheduling scenarios. Besides, the number of intra-Cloud network messages sent are evaluated. Simulated experiments performed using CloudSim and job data from real scientific problems show that our scheduler succeeds in balancing the studied metrics compared to schedulers based on Random assignment and Genetic Algorithms.

/pdf/balancing-throughput-and-response-time-in-online-scientific-5cg68octst.pdf

Carlos García Garino

Papers

An analysis of Recurrent Neural Networks for Botnet detection behavior

Automatic network intrusion detection: Current techniques and open issues

An autonomous labeling approach to support vector machines algorithms for network traffic anomaly detection

Software Survey: Distributed job scheduling based on Swarm Intelligence: A survey

Balancing Throughput and Response Time in Online Scientific Clouds via Ant Colony Optimization