Derek Bernhart

TL;DR: MAGE will help microarray data producers and users to exchange information by providing a common platform for data exchange, and MAGE-STK will make the adoption of MAGE easier.

TL;DR: A computer system for analyzing nucleic acid sequences is provided in this article, which is used to perform multiple methods for determining unknown bases by analyzing the fluorescence intensities of hybridized nucleic acids probes.

Abstract: Computer-aided techniques for analyzing biological sequences like nucleic acids are provided. The computer system may analyze hybridization intensities indicating hybridization affinity between nucleic acid probes and a sample nucleic acid sequence in order to call bases in the sample sequence. Multiple base calls may be combined to form a single base call. Additionally, the computer system may analyze hybridization intensities in order to monitor gene expression or the change in gene expression as compared to a baseline.

TL;DR: In this paper, a system is described for providing an interface enabled to transfer data between databases that comprises a database that stores data and is associated with a computer workstation, where the data includes data associated with biological probe arrays; and an interface that transfers the data between the databases based, at least in part, upon user selection.

TL;DR: In this paper, a data manager is described for providing a publish database for access by data mining tools and other data processing software applications, which includes a results-for-publication identifier that identifies synthesized probe array results and spotted probe arrays for publishing.