D
Donovan D Trinidad
Researcher at University of California, San Francisco
Publications - 5
Citations - 131
Donovan D Trinidad is an academic researcher from University of California, San Francisco. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 2, co-authored 3 publications receiving 58 citations.
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Journal ArticleDOI
Effects of underfeeding and oral vancomycin on gut microbiome and nutrient absorption in humans.
Alessio Basolo,Maximilian G. Hohenadel,Qi Yan Ang,Paolo Piaggi,Sascha Heinitz,Sascha Heinitz,Mary Walter,Peter Walter,Shannon Parrington,Donovan D Trinidad,Reiner Jumpertz von Schwartzenberg,Peter J. Turnbaugh,Jonathan Krakoff +12 more
TL;DR: The results indicate that nutrient absorption is sensitive to environmental perturbations and support the translational relevance of preclinical models demonstrating a possible causal role for the gut microbiome in dietary energy harvest.
Journal ArticleDOI
The structure of the endogenous ESX-3 secretion system
Nicole Poweleit,Nadine Czudnochowski,Rachel Nakagawa,Donovan D Trinidad,Kenan C. Murphy,Christopher M. Sassetti,Oren S. Rosenberg +6 more
TL;DR: Cryo-electron microscopy structure of an ESX-3 system, purified using an epitope tag inserted with recombineering into the chromosome of the model organism Mycobacterium smegmatis, reveals a stacked architecture that extends above and below the inner membrane of the bacterium.
Journal ArticleDOI
DIMPLE: deep insertion, deletion, and missense mutation libraries for exploring protein variation in evolution, disease, and biology
Christian B. Macdonald,David Nedrud,P. R. Grimes,Donovan D Trinidad,James Fraser,Willow Coyote-Maestas +5 more
TL;DR: In this article , a low cost and bias method, DIMPLE, was developed for systematically generating deletions, insertions, and missense mutations in genes, which were test on a range of targets, including Kir2.1.
Peer ReviewDOI
Author response: The structure of the endogenous ESX-3 secretion system
Nicole Poweleit,Nadine Czudnochowski,Rachel Nakagawa,Donovan D Trinidad,Kenan C. Murphy,Christopher M. Sassetti,Oren S. Rosenberg +6 more
Posted ContentDOI
The full spectrum of OCT1 (SLC22A1) mutations bridges transporter biophysics to drug pharmacogenomics
Sook Wah Yee,Christian B. Macdonald,Darko Mitrovic,Xujia Zhou,Megan L. Koleske,Jia Yang,Dina Buitrago Silva,P. R. Grimes,Donovan D Trinidad,Swati S. More,Linda Kachuri,John S. Witte,Lucie Delemotte,Kathleen M. Giacomini,Willow Coyote-Maestas +14 more
TL;DR: In this article , a structure-function model of OCT1s conformational ensemble without experimental structures is presented, showing that the major determinants of folding reside in the first 300 amino acids, including the first 6 transmembrane domains and the extracellular domain with a stabilizing and highly conserved stabilizing helical motif.