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Effirul Ikhwan Ramlan
Researcher at Intel
Publications - 28
Citations - 213
Effirul Ikhwan Ramlan is an academic researcher from Intel. The author has contributed to research in topics: RNA & Riboswitch. The author has an hindex of 7, co-authored 24 publications receiving 169 citations. Previous affiliations of Effirul Ikhwan Ramlan include University of Malaya & University College Dublin.
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Understanding the Limitations of Particle Swarm Algorithm for Dynamic Optimization Tasks: A Survey Towards the Singularity of PSO for Swarm Robotic Applications
TL;DR: This work investigated the basic properties of PSO algorithms relevant to the implementation of swarm robotics and characterized the limitations that promote this trend to manifest, and validated the existence of premature convergence in these PSO variants.
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COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures
Mohd Firdaus-Raih,Hazrina Yusof Hamdani,Nurul Nadzirin,Effirul Ikhwan Ramlan,Peter Willett,Peter J. Artymiuk +5 more
TL;DR: A graph theoretical algorithm implemented as a web server that is able to search for unbroken networks of hydrogen-bonded base interactions and thus provide an accounting of such interactions in RNA 3D structures and is also able to compare the hydrogen bond networks between two structures.
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InterRNA: a database of base interactions in RNA structures
TL;DR: The database InterRNA (INTERactions in RNA structures database) is described that contains records of known RNA 3D motifs as well as records for clusters of bases that are interconnected by hydrogen bonds and an analysis of the database content and comparisons with the existing corpus of knowledge clearly show that InterRNA is able to provide an extension of the annotations for known motifs.
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Comparative Sequence and Structure Analysis Reveals the Conservation and Diversity of Nucleotide Positions and Their Associated Tertiary Interactions in the Riboswitches
TL;DR: The authors' analysis provides evidence that some of these tertiary interactions are essential components to form the structure where their sequence positions are conserved despite a high degree of diversity in other parts of the respective riboswitches sequences.
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Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning.
TL;DR: The Drug ReposER (DRug REPOSitioning Exploration Resource) web server is designed to identify potential targets for drug repurposing based on sub-structural similarity to the binding interfaces of known drug binding sites.