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Evgeny Polevikov
Researcher at Saint Petersburg State University
Publications - 3
Citations - 357
Evgeny Polevikov is an academic researcher from Saint Petersburg State University. The author has contributed to research in topics: Metagenomics & Sequence assembly. The author has an hindex of 3, co-authored 3 publications receiving 115 citations.
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Journal ArticleDOI
metaFlye: scalable long-read metagenome assembly using repeat graphs
Mikhail Kolmogorov,Derek M. Bickhart,Bahar Behsaz,Alexey Gurevich,Mikhail Rayko,Sung Bong Shin,Kristen L. Kuhn,Jeffrey Yuan,Evgeny Polevikov,Timothy P. L. Smith,Pavel A. Pevzner +10 more
TL;DR: MetaFlye is presented, which addresses important long-read metagenomic assembly challenges, such as uneven bacterial composition and intra-species heterogeneity, and benchmarked metaFlye using simulated and mock bacterial communities and show that it consistently produces assemblies with better completeness and contiguity than state-of-the-art long- read assemblers.
Posted ContentDOI
metaFlye: scalable long-read metagenome assembly using repeat graphs
TL;DR: The metaFlye assembler is presented and it is demonstrated that it generates highly contiguous and accurate metagenome assemblies and captures many 16S RNA genes within long contigs, thus providing new opportunities for analyzing the microbial “dark matter of life”.
Proceedings ArticleDOI
Synteny Paths for Assembly Graphs Comparison
TL;DR: This work describes Asgan - an algorithm for efficient synteny paths decomposition, and uses it to evaluate assembly graphs of various bacterial assemblies produced by different approaches, and applies it to discover structural variations between the assemblies of 15 Drosophila genomes.