Soil Chemical Analysis

Persistent heavy metal pollution poses a major threat to all life forms in the environment due to its toxic effects. These metals are very reactive at low concentrations and can accumulate in the food web, causing severe public health concerns. Remediation using conventional physical and chemical methods is uneconomical and generates large volumes of chemical waste. Bioremediation of hazardous metals has received considerable and growing interest over the years. The use of microbial biosorbents is eco-friendly and cost effective; hence, it is an efficient alternative for the remediation of heavy metal contaminated environments. Microbes have various mechanisms of metal sequestration that hold greater metal biosorption capacities. The goal of microbial biosorption is to remove and/or recover metals and metalloids from solutions, using living or dead biomass and their components. This review discusses the sources of toxic heavy metals and describes the groups of microorganisms with biosorbent potential for heavy metal removal.

https://www.mdpi.com/1660-4601/14/1/94/pdf/1

A New Strategy for Heavy Metal Polluted Environments: A Review of Microbial Biosorbents

The rhizosphere supports the development and activity of a huge and diversified microbial community, including microorganisms capable to promote plant growth. Among the latter, plant growth-promoting rhizobacteria (PGPR) colonize roots of monocots and dicots, and enhance plant growth by direct and indirect mechanisms. Modification of root system architecture by PGPR implicates the production of phytohormones and other signals that lead, mostly, to enhanced lateral root branching and development of root hairs. PGPR also modify root functioning, improve plant nutrition and influence the physiology of the whole plant. Recent results provided first clues as to how PGPR signals could trigger these plant responses. Whether local and/or systemic, the plant molecular pathways involved remain often unknown. From an ecological point of view, it emerged that PGPR form coherent functional groups, whose rhizosphere ecology is influenced by a myriad of abiotic and biotic factors in natural and agricultural soils, and these factors can in turn modulate PGPR effects on roots. In this paper, we address novel knowledge and gaps on PGPR modes of action and signals, and highlight recent progress on the links between plant morphological and physiological effects induced by PGPR. We also show the importance of taking into account the size, diversity, and gene expression patterns of PGPR assemblages in the rhizosphere to better understand their impact on plant growth and functioning. Integrating mechanistic and ecological knowledge on PGPR populations in soil will be a prerequisite to develop novel management strategies for sustainable agriculture.

/pdf/plant-growth-promoting-rhizobacteria-and-root-system-3ygxbzsvj6.pdf

Plant growth-promoting rhizobacteria and root system functioning.

The use of excess conventional Phosphorus (P) fertilizers to improve agricultural productivity, in order to meet constantly increasing global food demand, potentially causes surface and ground water pollution, waterway eutrophication, soil fertility depletion, and accumulation of toxic elements such as high concentration of selenium (Se), arsenic (As) in the soil. Quite a number of soil microorganisms are capable of solubilizing/mineralizing insoluble soil phosphate to release soluble P and making it available to plants. These microorganisms improve the growth and yield of a wide variety of crops. Thus, inoculating seeds/crops/soil with Phosphate Solubilizing Microorganisms (PSM) is a promising strategy to improve world food production without causing any environmental hazard. Despite their great significance in soil fertility improvement, phosphorus-solubilizing microorganisms have yet to replace conventional chemical fertilizers in commercial agriculture. A better understanding of recent developments in PSM functional diversity, colonizing ability, mode of actions and judicious application should facilitate their use as reliable components of sustainable agricultural systems.In this review, we discussed various soil microorganisms that have the ability to solubilize phosphorus and hence have the potential to be used as bio fertilizers. The mechanisms of inorganic phosphate solubilization by PSM and the mechanisms of organic phosphorus mineralization are highlighted together with some factors that determine the success of this technology. Finally we provide some indications that the use of PSM will promote sustainable agriculture and conclude that this technology is ready for commercial exploitation in various regions worldwide.

/pdf/microbial-phosphorus-solubilization-and-its-potential-for-4gy5b3wior.pdf

Microbial Phosphorus Solubilization and Its Potential for Use in Sustainable Agriculture.

Use of silver and silver salts is as old as human civilization but the fabrication of silver nanoparticles (Ag NPs) has only recently been recognized. They have been specifically used in agriculture and medicine as antibacterial, antifungal and antioxidants. It has been demonstrated that Ag NPs arrest the growth and multiplication of many bacteria such as Bacillus cereus, Staphylococcus aureus, Citrobacter koseri, Salmonella typhii, Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumonia, Vibrio parahaemolyticus and fungus Candida albicans by binding Ag/Ag+ with the biomolecules present in the microbial cells. It has been suggested that Ag NPs produce reactive oxygen species and free radicals which cause apoptosis leading to cell death preventing their replication. Since Ag NPs are smaller than the microorganisms, they diffuse into cell and rupture the cell wall which has been shown from SEM and TEM images of the suspension containing nanoparticles and pathogens. It has also been shown that smaller nanoparticles are more toxic than the bigger ones. Ag NPs are also used in packaging to prevent damage of food products by pathogens. The toxicity of Ag NPs is dependent on the size, concentration, pH of the medium and exposure time to pathogens.

/pdf/a-review-on-biosynthesis-of-silver-nanoparticles-and-their-ivx9t7t18x.pdf

A review on biosynthesis of silver nanoparticles and their biocidal properties.

In this review, we briefly describe the biological application of PGPR for purposes of phytoremediating heavy metals. We address the agronomic practices that can be used to maximize the remediation potential of plants. Plant roots have limited ability ability mental from soil, mainly because metals have low solubility in the soil solution. The phytoavailability of metal is closely tired to the soil properties and the metabolites that are released by PGPR (e.g., siderophores, organ acids, and plant growth regulators). The role played by PGPR may be accomplished by their direct effect on plant growth dynamics, or indirectly by acidification, chelation, precipitation, or immobilization of heavy metals in the rhizosphere. From performing this review we have formed the following conclusions: The most critical factor is determining how efficient phytoremediation of metal-contaminated soil will be is the rate of uptake of the metal by plants. In turn, this depends on the rate of bioavailability. We know from our review that beneficial bacteria exist tha can alter metal bioavailability of plants. Using these beneficial bacteria improves the performance of phytoremediation of the metal-contaminated sites. Contaminated sites are often nutrient poor. Such soil can be nutrient enriched by applying metal-tolerant microbes that provide key needed plant nutrients. Applying metal-tolerant microbes therefore may be vital in enhancing the detoxification of heavy-metal-contaminated soils (Glick 2003). Plant stress generated by metal-contaminated soils can be countered by enhancing plant defense responses. Responses can be enhanced by alleviating the stress-mediated impact on plants by enzymatic hydrolysis of ACC, which is intermediate in the biosynthetic pathway of ethylene. These plant-microbe partnerships can act as decontaminators by improving phytoremediation. Soil microorganisms play a central role in maintaining soil structure, fertility and in remediating contaminated soils. Although not yet widely applied, utilizing a plant-microbe partnership is now being recognized as an important tool to enhance successful phytoremediaton of metal-contaminated sites. Hence, soil microbes are essential to soil health and sustainability. The key to their usefulness is their close association with, and positive influence on, plant growth and function. To capitalize on the early success of this technique and to improve it, additional research is needed on successful colonization and survival of inoculums under field conditions, because there are vital for the success of this approach. In addition, the effects of the interaction of PGPR and plant root-mediated process on the metal mobilization in soil are required, to better elucidate the mechanism that underlines bacterial-assisted phytoremediation is important. Finally, applying PGPR-associated phytoremediation under field conditions is important, because, to date, only locally contaminated sites have been treated with this technique, by using microbes cultured in the laboratory.

Advances in the application of plant growth-promoting rhizobacteria in phytoremediation of heavy metals.

Leptospirosis is a worldwide zoonosis caused by pathogenic Leptospira species, for which humans are accidental hosts. It is endemic in the tropical urban areas including our country, where seasonal epidemics are becoming increasingly common. Laboratory tests are necessary to confirm the diagnosis of clinically suspected leptospirosis due to its varied symptomatology. Moreover, leptospirosis must always be considered during the differential diagnosis of other tropical febrile illnesses. Laboratory analysis depends on the samples available and temporal stage of the illness. A confusing array of laboratory tests is described for the detection of this spirochete and antibodies. The conventional tests include direct microscopy, culture and the most widely used reference standard method -the microscopic agglutination test. In addition a variety of newer serological tests and those based on molecular techniques have been described. This review has attempted to describe the basis of these techniques and discussed the relative advantages and drawbacks of these assays with special emphasis on the selection of the most appropriate specimen and test, and the correct interpretation of the test result.

Laboratory diagnosis of leptospirosis

The biosynthesis of nanoparticles has been proposed as a cost effective and environmentally benevolent alternative to chemical and physical methods. In the present study, microwave assisted synthesis of silver nanoparticles (AgNPs) has been demonstrated using leaf extract of Fraxinus excelsior reducing aqueous AgNO3 solution. The synthesized nanoparticles have been characterized on the basis of fourier transform infrared spectroscopy (FT-IR), UV–Vis spectroscopy, scanning electron microscopy (SEM), transmission electron microscopy (TEM) and energy dispersive X-ray (EDX) analysis. The presence of a characteristic surface plasmon resonance (SPR) absorption band at 425 nm in UV–Vis reveals the reduction of silver metal ions into silver nanoparticles. FT-IR analysis was carried out to probe the possible functional group involved in the synthesis of AgNPs. Further leaf extracts and AgNPs were evaluated for antiradical scavenging activity by 1,1-diphenyl-2-picryl-hydrazyl (DPPH) assay.

/pdf/microwave-assisted-green-synthesis-of-silver-nanoparticles-4bplxb17b3.pdf

Microwave-assisted green synthesis of silver nanoparticles from Fraxinus excelsior leaf extract and its antioxidant assay

The use of effluents or marginal water in agriculture is an unavoidable practice and its largest source is the urban wastewater. In order to evaluate its effect on agricultural crops, an experiment was conducted to study its impact on Cicer arietinum L. along with different levels of phophorus. Three levels of water used for irrigation included ground water (GW), 50% wastewater (50%WW) and 100% wastewater (100%WW) and the varying levels of phosphorus (P0, P20, P40, P60) were also applied along with the basal application of nitrogen and potassium at the rate of 15 and 20 kg ha -1 respectively. The effect was evaluated on the basis of growth, biochemical attributes, photosynthesis and yield of the crop. From the results it was clear that the wastewaters proved not only effective source of water but the nutrients also and enhanced growth and photo- synthetic capacity and thereby yield of the plants. Moreover the fertilizer (P) requirement of the crop was also reduced. In conclusion the urban wastewater showed no inhibitory effect on the growth of the crop and thus could effectively supplement not only the nutrient requirement of the crop but may also act as the source of water.

/pdf/growth-photosynthesis-and-yield-of-chickpea-as-influenced-by-1e3a805wv8.pdf

Growth, Photosynthesis and Yield of Chickpea as Influenced by Urban Wastewater and Different Levels of Phosphorus

Plant diseases caused by plant pathogens substantially reduce crop production every year, resulting in massive economic losses throughout the world. Accurate detection and identification of plant pathogens is fundamental to plant pathogen diagnostics and, thus, plant disease management. Diagnostics and disease-management strategies require techniques to enable simultaneous detection and quantification of a wide range of pathogenic and non-pathogenic microorganisms. Over the past decade, rapid development of matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) techniques for characterization of microorganisms has enabled substantially improved detection and identification of microorganisms. In the biological sciences, MALDI-TOF MS is used to analyze specific peptides or proteins directly desorbed from intact bacteria, fungal spores, nematodes, and other microorganisms. The ability to record biomarker ions, in a broad m/z range, which are unique to and representative of individual microorganisms, forms the basis of taxonomic identification of microorganisms by MALDI-TOF MS. Recent advances in mass spectrometry have initiated new research, i.e. analysis of more complex microbial communities. Such studies are just beginning but have great potential for elucidation not only of the interactions between microorganisms and their host plants but also those among different microbial taxa living in association with plants. There has been a recent effort by the mass spectrometry community to make data from large scale mass spectrometry experiments publicly available in the form of a centralized repository. Such a resource could enable the use of MALDI-TOF MS as a universal technique for detection of plant pathogens and non-pathogens. The effects of experimental conditions are sufficiently understood, reproducible spectra can be obtained from computational database search, and microorganisms can be rapidly characterized by genus, species, or strain.

https://www.researchgate.net/profile/Faheem_Ahmad/publication/225073454_Potential_of_MALDI-TOF_mass_spectrometry_as_a_rapid_detection_technique_in_plant_pathology_Identification_of_plant-associated_microorganisms/links/02bfe50e972f268881000000.pdf

Faheem Ahmad

Papers

Advances in the application of plant growth-promoting rhizobacteria in phytoremediation of heavy metals.

Laboratory diagnosis of leptospirosis

Microwave-assisted green synthesis of silver nanoparticles from Fraxinus excelsior leaf extract and its antioxidant assay

Growth, Photosynthesis and Yield of Chickpea as Influenced by Urban Wastewater and Different Levels of Phosphorus

Potential of MALDI-TOF mass spectrometry as a rapid detection technique in plant pathology: identification of plant-associated microorganisms