There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality.

Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

I and i

Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

Fast parallel algorithms for short-range molecular dynamics

다중혈관 관상동맥 환자에서 y-문합을 이용하여 양쪽 내흉동맥만을 사용한 우회술의 조기 성적

抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Deposits of clastic carbonate-dominated (calciclastic) sedimentary slope systems in the rock record have been identified mostly as linearly-consistent carbonate apron deposits, even though most ancient clastic carbonate slope deposits fit the submarine fan systems better. Calciclastic submarine fans are consequently rarely described and are poorly understood. Subsequently, very little is known especially in mud-dominated calciclastic submarine fan systems. Presented in this study are a sedimentological core and petrographic characterisation of samples from eleven boreholes from the Lower Carboniferous of Bowland Basin (Northwest England) that reveals a >250 m thick calciturbidite complex deposited in a calciclastic submarine fan setting. Seven facies are recognised from core and thin section characterisation and are grouped into three carbonate turbidite sequences. They include: 1) Calciturbidites, comprising mostly of highto low-density, wavy-laminated bioclast-rich facies; 2) low-density densite mudstones which are characterised by planar laminated and unlaminated muddominated facies; and 3) Calcidebrites which are muddy or hyper-concentrated debrisflow deposits occurring as poorly-sorted, chaotic, mud-supported floatstones. These

Phd by thesis

The Lattice Boltzmann Method: Principles and Practice

We investigate contact angle hysteresis on chemically patterned and superhydrophobic surfaces, as the drop volume is quasistatically increased and decreased. We consider both two (cylindrical drops) and three (spherical drops) dimensions using analytical and numerical approaches to minimize the free energy of the drop. In two dimensions, we find, in agreement with other authors, a slip, jump, stick motion of the contact line. In three dimensions, this behavior persists, but the position and magnitude of the contact line jumps are sensitive to the details of the surface patterning. In two dimensions, we identify analytically the advancing and receding contact angles on the different surfaces, and we use numerical insights to argue that these provide bounds for the three-dimensional cases. We present explicit simulations to show that a simple average over the disorder is not sufficient to predict the details of the contact angle hysteresis and to support an explanation for the low contact angle hysteresis of suspended drops on superhydrophobic surfaces.

Modeling contact angle hysteresis on chemically patterned and superhydrophobic surfaces

The spreading of liquid drops on surfaces corrugated with micrometer-scale parallel grooves is studied both experimentally and numerically. Because of the surface patterning, the typical final drop shape is no longer spherical. The elongation direction can be either parallel or perpendicular to the direction of the grooves, depending on the initial drop conditions. We interpret this result as a consequence of both the anisotropy of the contact line movement over the surface and the difference in the motion of the advancing and receding contact lines. Parallel to the grooves, we find little hysteresis due to the surface patterning and that the average contact angle approximately conforms to Wenzel's law as long as the drop radius is much larger than the typical length scale of the grooves. Perpendicular to the grooves, the contact line can be pinned at the edges of the ridges, leading to large contact angle hysteresis.

Anisotropic drop morphologies on corrugated surfaces.

We theoretically investigate the apparent contact angle and contact angle hysteresis of a droplet placed on a liquid infused surface. We show that the apparent contact angle is not uniquely defined by material parameters, but also has a dependence on the relative size between the droplet and its surrounding wetting ridge formed by the infusing liquid. We derive a closed form expression for the contact angle in the limit of vanishing wetting ridge, and compute the correction for small but finite ridge, which corresponds to an effective line tension term. We also predict contact angle hysteresis on liquid infused surfaces generated by the pinning of the contact lines by the surface corrugations. Our analytical expressions for both the apparent contact angle and contact angle hysteresis can be interpreted as ‘weighted sums’ between the contact angles of the infusing liquid relative to the droplet and surrounding gas phases, where the weighting coefficients are given by ratios of the fluid surface tensions.

/pdf/apparent-contact-angle-and-contact-angle-hysteresis-on-5alk7d21g2.pdf

Apparent contact angle and contact angle hysteresis on liquid infused surfaces

We investigate the transition between the Cassie-Baxter and Wenzel states of a slowly evaporating, micron-scale drop on a superhydrophobic surface. In two dimensions analytical results show that there are two collapse mechanisms. For long posts the drop collapses when it is able to overcome the free-energy barrier presented by the hydrophobic posts. For short posts, as the drop loses volume, its curvature increases allowing it to touch the surface below the posts. We emphasise the importance of the contact line retreating across the surface as the drop becomes smaller: this often preempts the collapse. In a quasi–three-dimensional simulation we find similar behaviour, with the additional feature that the drop can depin from all but the peripheral posts, so that its base resembles an inverted bowl.

http://iopscience.iop.org/article/10.1209/0295-5075/81/36003/pdf

Halim Kusumaatmaja

Papers

The Lattice Boltzmann Method: Principles and Practice

Modeling contact angle hysteresis on chemically patterned and superhydrophobic surfaces

Anisotropic drop morphologies on corrugated surfaces.

Apparent contact angle and contact angle hysteresis on liquid infused surfaces

The collapse transition on superhydrophobic surfaces