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Inbal Halperin
Researcher at Tel Aviv University
Publications - 6
Citations - 1860
Inbal Halperin is an academic researcher from Tel Aviv University. The author has contributed to research in topics: Searching the conformational space for docking & Binding site. The author has an hindex of 6, co-authored 6 publications receiving 1776 citations.
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Principles of docking: An overview of search algorithms and a guide to scoring functions
TL;DR: The docking field has come of age, and the time is ripe to present the principles of docking, reviewing the current state of the field from both the computational and the biological points of view.
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Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking.
Dina Schneidman-Duhovny,Yuval Inbar,Vladimir Polak,Maxim Shatsky,Inbal Halperin,Hadar Benyamini,Adi Barzilai,Oranit Dror,Nurit Haspel,Ruth Nussinov,Ruth Nussinov,Haim J. Wolfson +11 more
TL;DR: A very efficient rigid “unbound” soft docking methodology, which is based on detection of geometric shape complementarity, allowing liberal steric clash at the interface, avoiding the exhaustive search of the 6D transformation space.
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Protein-Protein Interactions: Coupling of Structurally Conserved Residues and of Hot Spots across Interfaces. Implications for Docking
TL;DR: Overall, protein-protein interactions appear to consist of regions of high and low packing density, with the hot spots organized in the former, and the high local packing density in binding interfaces is reminiscent of protein cores.
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Correlated mutations: advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
TL;DR: Overall, the results of the study indicate that current methodologies of correlated mutations analysis are not suitable for large‐scale intermolecular contact prediction, and thus cannot assist in docking.
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SiteLight: binding-site prediction using phage display libraries.
TL;DR: The applicability of phage display libraries for automated binding site prediction on three‐dimensional structures is suggested and a large diverse data set is created for assessing the ability of SiteLight to correctly predict binding sites.