I
Isabelle Phan
Researcher at Swiss Institute of Bioinformatics
Publications - 13
Citations - 4615
Isabelle Phan is an academic researcher from Swiss Institute of Bioinformatics. The author has contributed to research in topics: InterPro & Proteome. The author has an hindex of 10, co-authored 13 publications receiving 4284 citations. Previous affiliations of Isabelle Phan include European Bioinformatics Institute.
Papers
More filters
Journal ArticleDOI
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
Brigitte Boeckmann,Amos Marc Bairoch,Rolf Apweiler,Marie-Claude Blatter,Anne Estreicher,Elisabeth Gasteiger,Maria Jesus Martin,Karine Michoud,Claire O'Donovan,Isabelle Phan,Sandrine Pilbout,Michel Schneider +11 more
TL;DR: The SWISS-PROT protein knowledgebase connects amino acid sequences with the current knowledge in the Life Sciences by providing an interdisciplinary overview of relevant information by bringing together experimental results, computed features and sometimes even contradictory conclusions.
Journal ArticleDOI
Infrastructure for the life sciences: design and implementation of the UniProt website
Eric Jain,Amos Marc Bairoch,Amos Marc Bairoch,Séverine Duvaud,Isabelle Phan,Nicole Redaschi,Baris E. Suzek,Maria Jesus Martin,Peter B. McGarvey,Elisabeth Gasteiger +9 more
TL;DR: The design and implementation of the new UniProt website is discussed, which was released in July 2008, and how it improves data access for users with different levels of experience, as well as to machines for programmatic access is shown.
Journal ArticleDOI
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
Paul J. Kersey,Lawrence Bower,Lorna Morris,Alan Horne,Robert Petryszak,Carola Kanz,Alexander Kanapin,Ujjwal Das,Karine Michoud,Isabelle Phan,Alexandre Gattiker,Tamara Kulikova,Nadeem Faruque,Karyn Duggan,Peter McLaren,Britt Reimholz,Laurent Duret,Simon Penel,Ingmar Reuter,Rolf Apweiler +19 more
TL;DR: This analysis focuses on bacterial and archaeal DNA sequences in which annotation has been upgraded through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM.
Journal ArticleDOI
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
Tania Lima,Andrea H. Auchincloss,Elisabeth Coudert,Guillaume Keller,Karine Michoud,Catherine Rivoire,Virginie Bulliard,Edouard de Castro,Corinne Lachaize,Delphine Baratin,Isabelle Phan,Lydie Bougueleret,Amos Marc Bairoch +12 more
TL;DR: A semi-automated system, HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes), that uses manually built annotation templates for protein families to propagate annotation to all members of manually defined protein families, using very strict criteria.
Journal ArticleDOI
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes
Rolf Apweiler,Margaret Biswas,Wolfgang Fleischmann,Alexander Kanapin,Youla Karavidopoulou,Paul J. Kersey,Evgenia V. Kriventseva,Virginie Mittard,Nicola Mulder,Isabelle Phan,Evgeni M. Zdobnov +10 more
TL;DR: The SWISS-PROT group at EBI has developed the Proteome Analysis Database utilising existing resources and providing comparative analysis of the predicted protein coding sequences of the complete genomes of bacteria, archaea and eukaryotes, giving a new perspective on families, domains and sites.