K
Karyn Duggan
Researcher at European Bioinformatics Institute
Publications - 6
Citations - 1622
Karyn Duggan is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Sequence Read Archive & European Nucleotide Archive. The author has an hindex of 5, co-authored 6 publications receiving 1569 citations.
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The EMBL Nucleotide Sequence Database
Tamara Kulikova,Philippe Aldebert,Nicola Althorpe,Wendy Baker,Kirsty Bates,Paul Browne,Alexandra van den Broek,Guy Cochrane,Karyn Duggan,Ruth Y. Eberhardt,Nadeem Faruque,Maria Garcia-Pastor,Nicola Harte,Carola Kanz,Rasko Leinonen,Quan Lin,Vincent Lombard,Rodrigo Lopez,Renato Mancuso,Michelle McHale,Francesco Nardone,Ville Silventoinen,Peter Stoehr,Guenter Stoesser,Mary Ann Tuli,Katerina Tzouvara,Robert Vaughan,Dan Wu,Weimin Zhu,Rolf Apweiler +29 more
TL;DR: Changes over the past year include the removal of the sequence length limit, the launch of the EMBLCDSs dataset, extension of the Sequence Version Archive functionality and the revision of quality rules for TPA data.
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EMBL Nucleotide Sequence Database in 2006
Tamara Kulikova,Ruth Akhtar,Philippe Aldebert,Nicola Althorpe,Mikael Andersson,Alastair Baldwin,Kirsty Bates,Sumit Bhattacharyya,Lawrence Bower,Paul Browne,Matias Castro,Guy Cochrane,Karyn Duggan,Ruth Y. Eberhardt,Nadeem Faruque,Gemma Hoad,Carola Kanz,Charles Lee,Rasko Leinonen,Quan Lin,Vincent Lombard,Rodrigo Lopez,Dariusz Lorenc,Hamish McWilliam,Gaurab Mukherjee,Francesco Nardone,Maria Pilar Garcia Pastor,Sheila Plaister,Siamak Sobhany,Peter Stoehr,Robert Vaughan,Dan Wu,Weimin Zhu,Rolf Apweiler +33 more
TL;DR: The EMBL Nucleotide Sequence Database at the EMBL European Bioinformatics Institute, UK, offers a large and freely accessible collection of nucleotide sequences and accompanying annotation, maintained in collaboration with DDBJ and GenBank.
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Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
Paul J. Kersey,Lawrence Bower,Lorna Morris,Alan Horne,Robert Petryszak,Carola Kanz,Alexander Kanapin,Ujjwal Das,Karine Michoud,Isabelle Phan,Alexandre Gattiker,Tamara Kulikova,Nadeem Faruque,Karyn Duggan,Peter McLaren,Britt Reimholz,Laurent Duret,Simon Penel,Ingmar Reuter,Rolf Apweiler +19 more
TL;DR: This analysis focuses on bacterial and archaeal DNA sequences in which annotation has been upgraded through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM.
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EMBL Nucleotide Sequence Database: developments in 2005.
Guy Cochrane,Philippe Aldebert,Nicola Althorpe,Mikael Andersson,Wendy Baker,Alastair Baldwin,Kirsty Bates,Sumit Bhattacharyya,Paul Browne,Alexandra van den Broek,Matias Castro,Karyn Duggan,Ruth Y. Eberhardt,Nadeem Faruque,John Gamble,Carola Kanz,Tamara Kulikova,Charles Lee,Rasko Leinonen,Quan Lin,Vincent Lombard,Rodrigo Lopez,Michelle McHale,Hamish McWilliam,Gaurab Mukherjee,Francesco Nardone,Maria Pilar Garcia Pastor,Siamak Sobhany,Peter Stoehr,Katerina Tzouvara,Robert Vaughan,Dan Wu,Weimin Zhu,Rolf Apweiler +33 more
TL;DR: The EMBL Nucleotide Sequence Database at the EMBL European Bioinformatics Institute, UK, offers a comprehensive set of publicly available nucleotide sequence and annotation, freely accessible to all.
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Public services from the European Bioinformatics Institute
TL;DR: The EBI provides numerous free-of-charge, publicly available bioinformatics services that can be divided into the following categories: ftp downloads; data submissions processing and biological database production; access to query; analysis and retrieval systems and tools; user support; training and education and industry support through EBI's SME program.