Atmospheric aerosol particles of biological origin are a very diverse group of biological materials and structures, including microorganisms, dispersal units, fragments and excretions of biological organisms. In recent years, the impact of biological aerosol particles on atmospheric processes has been studied with increasing intensity, and a wealth of new information and insights has been gained. This review outlines the current knowledge on major categories of primary biological aerosol particles (PBAP): bacteria and archaea, fungal spores and fragments, pollen, viruses, algae and cyanobacteria, biological crusts and lichens and others like plant or animal fragments and detritus. We give an overview of sampling methods and physical, chemical and biological techniques for PBAP analysis (cultivation, microscopy, DNA/RNA analysis, chemical tracers, optical and mass spectrometry, etc.). Moreover, we address and summarise the current understanding and open questions concerning the influence of PBAP on the atmosphere and climate, i.e. their optical properties and their ability to act as ice nuclei (IN) or cloud condensation nuclei (CCN). We suggest that the following research activities should be pursued in future studies of atmospheric biological aerosol particles: (1) develop efficient and reliable analytical techniques for the identification and quantification of PBAP; (2) apply advanced and standardised techniques to determine the abundance and diversity of PBAP and their seasonal variation at regional and global scales (atmospheric biogeography); (3) determine the emission rates, optical properties, IN and CCN activity of PBAP in field measurements and laboratory experiments; (4) use field and laboratory data to constrain numerical models of atmospheric transport, transformation and climate effects of PBAP. Keywords: primary biological atmospheric aerosol; climate; cloud condensation nuclei; biology; atmospheric ice nuclei (Published: 22 February 2012) Citation: Tellus B 2012, 64 , 15598, DOI: 10.3402/tellusb.v64i0.15598

https://www.tandfonline.com/doi/pdf/10.3402/tellusb.v64i0.15598

Primary biological aerosol particles in the atmosphere: a review

1. Scope of this Review 2270 2. Ambient Ionization Techniques 2272 2.1. Solid−Liquid Extraction-Based Techniques 2272 2.1.1. Desorption Electrospray Ionization (DESI) 2272 2.1.2. Desorption Ionization by Charge Exchange (DICE) 2277 2.1.3. Easy Ambient Sonic-Spray Ionization (EASI) 2278 2.1.4. Liquid Micro Junction Surface Sampling Probe (LMJ-SSP) 2279 2.1.5. Liquid Extraction Surface Analysis (LESA) 2279 2.1.6. Nanospray Desorption Electrospray Ionization (nanoDESI) 2280 2.1.7. Desorption Atmospheric Pressure Photoionization (DAPPI) 2280 2.2. Plasma-Based Techniques 2281 2.2.1. Direct Analysis in Real Time (DART) 2282 2.2.2. Flowing Atmospheric-Pressure Afterglow (FAPA) 2286 2.2.3. Low Temperature Plasma (LTP) & Dielectric Barrier Discharge Ionization (DBDI) 2286 2.2.4. Chemical Sputtering/Ionization Techniques 2287 2.3. Two-Step Thermal/Mechanical Desorption/ Ablation (Non-Laser) Techniques 2288 2.3.1. Neutral Desorption Extractive Electrospray Ionization (ND-EESI) 2288 2.3.2. Beta Electron-Assisted Direct Chemical Ionization (BADCI) 2288 2.3.3. Atmospheric Pressure Thermal Desorption-Secondary Ionization (AP-TD/SI) 2289 2.3.4. Probe Electrospray Ionization (PESI) 2289 2.4. Two-Step Laser-Based Desorption Ablation Techniques 2290 2.4.1. Laser-Based Hybrid Techniques Coupled to ESI or Plasma Ionization 2290 2.4.2. Laser Electrospray Mass Spectrometry (LEMS) 2292 2.4.3. Laser Ablation Atmospheric Pressure Photoionization (LAAPPI) 2293 2.4.4. Laser Ablation Sample Transfer 2293 2.5. Acoustic Desorption Techniques 2294 2.5.1. Laser-Induced Acoustic Desorption (LIAD) 2294 2.5.2. Radiofrequency Acoustic Desorption Ionization (RADIO) 2295 2.5.3. Surface Acoustic Wave-Based Techniques 2295 2.6. Multimode Techniques 2296 2.6.1. Desorption Electrospray/Metastable-Induced Ionization (DEMI) 2296 2.7. Other Techniques 2296 2.7.1. Rapid Evaporative Ionization Mass Spectrometry (REIMS) 2296 2.7.2. Laser Desorption Ionization (LDI) 2297 2.7.3. Switched Ferroelectric Plasma Ionizer (SwiFerr) 2297 2.7.4. Laserspray Ionization (LSI) 2297 3. Remote Sampling 2298 3.1. Nonproximate Ambient MS 2298 3.2. Fundamentals of Neutral/Ion Transport 2298 3.3. Transport of Neutrals 2298 3.4. Transport of Ions 2299 4. Future Directions 2300 Author Information 2300 Corresponding Author 2300 Author Contributions 2300 Notes 2300 Biographies 2300 Acknowledgments 2301 References 2301

Mass Spectrometry: Recent Advances in Direct Open Air Surface Sampling/Ionization

Advances in instrumentation, proteomics, and bioinformatics have contributed to the successful applications of mass spectrometry (MS) for detection, identification, and classification of microorganisms. These MS applications are based on the detection of organism-specific biomarker molecules, which allow differentiation between organisms to be made. Intact proteins, their proteolytic peptides, and nonribosomal peptides have been successfully utilized as biomarkers. Sequence-specific fragments for biomarkers are generated by tandem MS of intact proteins or proteolytic peptides, obtained after, for instance, microwave-assisted acid hydrolysis. In combination with proteome database searching, individual biomarker proteins are unambiguously identified from their tandem mass spectra, and from there the source microorganism is also identified. Such top-down or bottom-up proteomics approaches permit rapid, sensitive, and confident characterization of individual microorganisms in mixtures and are reviewed here. Examples of MS-based functional assays for detection of targeted microorganisms, e.g., Bacillus anthracis, in environmental or clinically relevant backgrounds are also reviewed.

Mass spectrometry for rapid characterization of microorganisms

Bioaerosols such as bacterial and fungal cells and their spores are - along with non-biological particles - part of indoor airborne particulate matter and have been related since a long time to health issues of human beings as well as flora, and fauna. To identify the different risks and to establish exposure thresholds, microbiology of air samples from a series of indoor environments must be characterized, i.e. the different microorganisms (bacteria and fungi) must be identified and quantified. This review discusses the techniques of air sampling and sample analysis. In addition, a literature study has been performed regarding the levels of these microorganisms in various indoor occupational (e.g., schools, offices, hospitals, museums) and dwelling environments. These results will provide a significant scientific basis for indoor air quality control and help in elaborating risk prevention programs for workers and dwellers. This review shall contribute to the knowledge of identification and quantification of airborne microbial constituents in various indoor environments. Combining the indoor microbial load data with data from studies focusing on health effects caused by inhalation of specific airborne microorganisms will allow the evaluation of various risks to which inhabitants are exposed.

Bioaerosols in Indoor Environment - A Review with Special Reference to Residential and Occupational Locations

We have used an infrared laser for desorption of material and ionization by interaction with electrosprayed solvent. Infrared laser-assisted desorption electrospray ionization (IR LADESI) mass spectrometry was used for the direct analysis of water-containing samples under ambient conditions. An ion trap mass spectrometer was modified to include a pulsed Er:YAG laser at 2.94 microm wavelength coupled into a germanium oxide optical fiber for desorption at atmospheric pressure and a nanoelectrospray source for ionization. Analytes in aqueous solution were placed on a stainless steel target and irradiated with the pulsed IR laser. Material desorbed and ablated from the target was ionized by a continuous stream of charged droplets from the electrosprayed solvent. Peptide and protein samples analyzed using this method yield mass spectra similar to those obtained by conventional electrospray. Blood and urine were analyzed without sample pretreatment to demonstrate the capability of IR LADESI for direct analysis of biological fluids. Pharmaceutical products were also directly analyzed. Finally, the role of water as a matrix in the IR LADESI process is discussed.

Infrared laser-assisted desorption electrospray ionization mass spectrometry

A method was developed for collection and analysis of bioaerosols by matrix-assisted laser desorption/ionization (MALDI) time-of-flight mass spectrometry using a modified Andersen N6 bioaerosol collector. The overall goal of the study was to develop methods for obtaining mass spectra with minimal reagents and treatment steps for potential use in remote collection and analysis systems. Test bioaerosol particles were generated from a nebulized E. coli bacterial suspension and collected on MALDI targets placed in an Andersen N6 single-stage aerosol impactor. The bioaerosols were mixed with matrix either by deposition on a bare target with the matrix solution added later, or by deposition on a target pre-coated with matrix. The matrix compounds α-cyano-4-hydroxycinnamic acid (CHCA) and sinapic acid (SA) were tested and the SA matrix was found to give the best results in number of peaks, resolution, and signal-to-noise ratio. Deposition of bioaerosol particles onto the matrix pre-coated target did not produce signal in the m/z region above 1000, but the signal could be recovered with the addition of a 1:1 (v/v) acetonitrile/water solvent. Addition of solvent by pipette to the pre-coated targets after particle deposition recovered signal comparable to the dried-droplet sample preparations, whereas solvent sprayed into the impactor recovered fewer peaks. Deposition on pre-coated targets with post-collection solvent addition was superior to deposition on bare target followed by post-collection addition of matrix solution. Copyright © 2005 John Wiley & Sons, Ltd.

Matrix-assisted laser desorption/ionization mass spectrometry of collected bioaerosol particles.

The quantity and size distribution of micrometer-sized particles ejected from thin films of glycerol were measured using light scattering particle sizing. Thin glycerol films were irradiated at atmospheric pressure with an infrared optical parametric oscillator at wavelengths between 2.95 and 3.1 microm. Particulate material resulting from the ablation was sampled directly into a particle-sizing instrument and particles with diameters greater than 500 nm were detected and sized by light scattering. The fluence threshold for particle formation was between 2000 and 3000 J/m2 for all laser wavelengths. At threshold, fewer than 100 particles/cm3 were detected and this value increased to several thousand particles/cm3 at twice the threshold fluence. The average size of the coarse particles ranged from 900 nm to 1.6 microm at threshold and decreased by 10-20% at twice the threshold fluence. The coarse particle formation observations were compared with ion formation behavior in matrix-assisted laser desorption ionization and interpreted in terms of a photomechanical mechanism for material ablation and ion formation.

Particle formation by infrared laser ablation of glycerol: implications for ion formation.

Matrix-assisted laser desorption/ionization (MALDI) was performed using two-pulsed lasers with wavelengths in the infrared and ultraviolet regions. A 2.94m pulsed optical parametric oscillator laser system and a 337 nm pulsed nitrogen laser irradiated the same spot on the sample target. Sinapinic acid (SA), 2,5-dihydroxybenzoic acid (DHB), -cyano-4-hydroxycinnamic acid (CCA), and 4-nitroaniline (NA) were used as matrices, and bovine insulin and cytochrome C were used as analytes. The laser energy was adjusted so that one-laser MALDI and LDI was at a minimum and the matrix and analyte ion signal was enhanced when the two lasers were fired together. Two-laser LDI was observed with SA, DHB, and NA matrices and two-laser MALDI was observed with SA and DHB. Plots of ion signal as a function of delay between the IR and UV lasers show two-laser signal from 0 ns up to a delay of 500 ns when the IR laser is fired before the UV laser. The results are interpreted in terms of IR laser heating of the target that leads to an enhancement in UV LDI and MALDI.

Two-laser infrared and ultraviolet matrix-assisted laser desorption/ionization.

Matrix-assisted laser desorption/ionization with untreated silicon targets.

Purpose – The purpose of this paper is to study and minimize loss of vitamin B9 in bread during warming protocol.Design/methodology/approach – In this study, warming intensity, warming time, warming device, and bread storage method were selected as the most effective factors on B9 loss in bread. The variation of B9 in bread and its loss were studied with orthogonal array design (OAD) using the L9 optimization matrix.Findings – With a calculated per cent of contribution (P%) of error of 0.38 per cent and according to the analysis of variance, ANOVA, of the fluorescence data, 86 per cent of B9 was saved by using toaster as the warming device, a bread warming temperature of <200○F and a warming time of <10min. Fluorescence method evaluated warming intensity and warming device as the most powerful factors affecting the B9 concentration in bread with corresponding P% of 42.28 per cent and 41.72 per cent, respectively.Practical implications – In conclusion, heat destroyed significant portion of B9 in bread duri...

Jae-Kuk Kim

Papers

Matrix-assisted laser desorption/ionization mass spectrometry of collected bioaerosol particles.

Particle formation by infrared laser ablation of glycerol: implications for ion formation.

Two-laser infrared and ultraviolet matrix-assisted laser desorption/ionization.

Matrix-assisted laser desorption/ionization with untreated silicon targets.

Orthogonal array design for minimizing loss of vitamin B9 in bread