Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

The Theory of Island Biogeography

So far in this course we have dealt entirely with the evolution of characters that are controlled by simple Mendelian inheritance at a single locus. There are notes on the course website about gametic disequilibrium and how allele frequencies change at two loci simultaneously, but we didn’t discuss them. In every example we’ve considered we’ve imagined that we could understand something about evolution by examining the evolution of a single gene. That’s the domain of classical population genetics. For the next few weeks we’re going to be exploring a field that’s actually older than classical population genetics, although the approach we’ll be taking to it involves the use of population genetic machinery. If you know a little about the history of evolutionary biology, you may know that after the rediscovery of Mendel’s work in 1900 there was a heated debate between the “biometricians” (e.g., Galton and Pearson) and the “Mendelians” (e.g., de Vries, Correns, Bateson, and Morgan). Biometricians asserted that the really important variation in evolution didn’t follow Mendelian rules. Height, weight, skin color, and similar traits seemed to

Human biochemical genetics

An essential textbook for any student or researcher in biology needing to design experiments, sample programs or analyse the resulting data The text begins with a revision of estimation and hypothesis testing methods, covering both classical and Bayesian philosophies, before advancing to the analysis of linear and generalized linear models Topics covered include linear and logistic regression, simple and complex ANOVA models (for factorial, nested, block, split-plot and repeated measures and covariance designs), and log-linear models Multivariate techniques, including classification and ordination, are then introduced Special emphasis is placed on checking assumptions, exploratory data analysis and presentation of results The main analyses are illustrated with many examples from published papers and there is an extensive reference list to both the statistical and biological literature The book is supported by a website that provides all data sets, questions for each chapter and links to software

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Experimental Design and Data Analysis for Biologists

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Modern Applied Statistics With S

Trillions of microbes inhabit the human intestine, forming a complex ecological community that influences normal physiology and susceptibility to disease through its collective metabolic activities and host interactions. Understanding the factors that underlie changes in the composition and function of the gut microbiota will aid in the design of therapies that target it. This goal is formidable. The gut microbiota is immensely diverse, varies between individuals and can fluctuate over time — especially during disease and early development. Viewing the microbiota from an ecological perspective could provide insight into how to promote health by targeting this microbial community in clinical treatments.

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Diversity, stability and resilience of the human gut microbiota

1 In laboratory microcosm experiments, co-occurring plant species were found to support very different rates of sporulation of arbuscular mycorrhizal (AM) fungi. These differences were not affected by the time of harvest, suggesting that they reflect host-dependent differences in fungal growth rates, rather than host-dependent timing of sporulation. 2 Spore counts in field soil and estimates from sorghum trap cultures showed that the association of AM fungi with particular host plants in the field was positively correlated with the sporulation rates observed on those hosts in the microcosm experiments. 3 The AM fungal species richness observed at the field site was high relative to estimates made in previous studies. 23 distinct species of AM fungi were found, seven of which have not been previously described. 4 The host-dependence of the relative growth rates of fungal populations may play an important role in the maintenance of fungal species diversity.

Host-Dependent Sporulation and Species Diversity of Arbuscular Mycorrhizal Fungi in a Mown Grassland

The factors that influence a plant’s ability to invade are not well understood. Many mechanisms are involved and the relative importance of different mechanisms depends on the specific invasion. Here we consider one factor—mycorrhizal symbioses. These symbioses are ubiquitous interactions involving the plants and soil fungi of most terrestrial ecosystems. We develop a conceptual framework for considering mycorrhizal symbioses in plant species invasions. The most critical aspects of this framework are: (a) the mycorrhizal status and (b) the growth response of the invading plant, (c) the ability of the plant to associate with different fungi, (d ) the quality of the plant as a host for local fungi and feedback dynamics, (e) the biogeography and dispersal of the fungi, ( f ) the introduction and spread of the fungi, and ( g) the ecological consequences of the creation of novel mycorrhizas. These aspects can critically influence the trajectory of a plant invasion, and this symbiosis deserves more attention in plant invasion biology.

Mycorrhizal Symbioses and Plant Invasions

The composition of the soil microbial community can be altered dramatically due to association with individual plant species, and these effects on the microbial community can have important feedbacks on plant ecology. Negative plant-soil feedback plays primary roles in maintaining plant community diversity, whereas positive plant-soil feedback may cause community conversion. Host-specific differentiation of the microbial community results from the trade-offs associated with overcoming plant defense and the specific benefits associated with plant rewards. Accumulation of host-specific pathogens likely generates negative feedback on the plant, while changes in the density of microbial mutualists likely generate positive feedback. However, the competitive dynamics among microbes depends on the multidimensional costs of virulence and mutualism, the fine-scale spatial structure within plant roots, and active plant allocation and localized defense. Because of this, incorporating a full view of microbial dynamics is essential to explaining the dynamics of plant-soil feedbacks and therefore plant community ecology.

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Microbial population and community dynamics on plant roots and their feedbacks on plant communities.

Mutualisms, beneficial interactions between species, are expected to be unstable because delivery of benefit likely involves fitness costs and selection should favour partners that deliver less benefit. Yet, mutualisms are common and persistent, even in the largely promiscuous associations between plants and soil microorganisms such as arbuscular mycorrhizal fungi. In two different systems, we demonstrate preferential allocation of photosynthate by host plants to the more beneficial of two AM fungal symbionts. This preferential allocation could allow the persistence of the mutualism if it confers sufficient advantage to the beneficial symbiont that it overcomes the cost of mutualism. We find that the beneficial fungus does increase in biomass when the fungi are spatially separated within the root system. However, in well-mixed fungal communities, non-beneficial fungi proliferate as expected from their reduced cost of mutualism. Our findings suggest that preferential allocation within spatially structured microbial communities can stabilize mutualisms between plants and root symbionts.

Preferential allocation to beneficial symbiont with spatial structure maintains mycorrhizal mutualism.

Presents research on the ecology of interactions between plants and arbuscular mycorrhizal (AM) fungi. Discovery that the underground world is diverse and dynamic; Process of discovery; Mechanisms that might maintain fungal diversity; Implications of this diversity for ecology as a whole; Importance of AM fungi in the facilitation of plants' uptake of phosphorus.

https://www.jstor.org/stable/10.1641/0006-3568(2001)051%5B0923:AMFMDT%5D2.0.CO;2

James D. Bever

Papers

Host-Dependent Sporulation and Species Diversity of Arbuscular Mycorrhizal Fungi in a Mown Grassland

Mycorrhizal Symbioses and Plant Invasions

Microbial population and community dynamics on plant roots and their feedbacks on plant communities.

Preferential allocation to beneficial symbiont with spatial structure maintains mycorrhizal mutualism.

Arbuscular Mycorrhizal Fungi: More Diverse than Meets the Eye, and the Ecological Tale of Why