J
Jay C. Humphrey
Researcher at European Bioinformatics Institute
Publications - 3
Citations - 915
Jay C. Humphrey is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Ensembl & Genomics. The author has an hindex of 3, co-authored 3 publications receiving 844 citations. Previous affiliations of Jay C. Humphrey include Wellcome Trust & Cold Spring Harbor Laboratory.
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Journal ArticleDOI
Ensembl Genomes 2016: more genomes, more complexity
Paul J. Kersey,James E. Allen,Irina M. Armean,Sanjay Boddu,Bruce J. Bolt,Denise Carvalho-Silva,Mikkel B. Christensen,Paul Davis,Lee J. Falin,Christoph Grabmueller,Jay C. Humphrey,Arnaud Kerhornou,Julia Khobova,Naveen K. Aranganathan,Nicholas Langridge,Ernesto Lowy,Mark D. McDowall,Uma Maheswari,Michael Nuhn,Chuang Kee Ong,Bert Overduin,Michael Paulini,Helder Pedro,Emily Perry,Giulietta Spudich,Electra Tapanari,Brandon Walts,Gareth Williams,Marcela K. Tello-Ruiz,Joshua C. Stein,Sharon Wei,Doreen Ware,Dan Bolser,Kevin L. Howe,Eugene Kulesha,Daniel Lawson,Gareth Maslen,Daniel M. Staines +37 more
TL;DR: This paper provides an update to the previous publications about the Ensembl Genomes, with a focus on recent developments, including the development of new analyses and views to represent polyploid genomes and the continued up-scaling of the resource.
Journal ArticleDOI
Ensembl Genomes 2013: scaling up access to genome-wide data
Paul J. Kersey,James E. Allen,Mikkel B. Christensen,Paul Davis,Lee J. Falin,Christoph Grabmueller,Daniel S.T. Hughes,Jay C. Humphrey,Arnaud Kerhornou,Julia Khobova,Nicholas Langridge,Mark D. McDowall,Uma Maheswari,Gareth Maslen,Michael Nuhn,Chuang Kee Ong,Michael Paulini,Helder Pedro,Iliana Toneva,Mary Ann Tuli,Brandon Walts,Gareth Williams,Derek Wilson,Ken Youens-Clark,Marcela K. Monaco,Joshua C. Stein,Xuehong Wei,Doreen Ware,Dan Bolser,Kevin L. Howe,Eugene Kulesha,Daniel Lawson,Daniel M. Staines +32 more
TL;DR: The resource has scaled up its representation of bacterial genomes, and now includes the genomes of over 9000 bacteria, and specific extensions to the web and programmatic interfaces have been developed to support users in navigating these large data sets.
Journal ArticleDOI
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species
Paul J. Kersey,Daniel M. Staines,Daniel Lawson,Eugene Kulesha,Paul S. Derwent,Jay C. Humphrey,Daniel S.T. Hughes,Stephen Keenan,Arnaud Kerhornou,Gautier Koscielny,Nicholas Langridge,Mark D. McDowall,Karyn Megy,Uma Maheswari,Michael Nuhn,Michael Paulini,Helder Pedro,Iliana Toneva,Derek Wilson,Andrew D. Yates,Ewan Birney +20 more
TL;DR: Ensembl Genomes provides a complementary set of resources for non-vertebrate species through a consistent set of programmatic and interactive interfaces that provide access to data including reference sequence, gene models, transcriptional data, polymorphisms and comparative analysis.