J
Jens Allmer
Researcher at İzmir Institute of Technology
Publications - 79
Citations - 3872
Jens Allmer is an academic researcher from İzmir Institute of Technology. The author has contributed to research in topics: MiRBase & Regulation of gene expression. The author has an hindex of 19, co-authored 75 publications receiving 3465 citations. Previous affiliations of Jens Allmer include İzmir University of Economics & University of Pennsylvania.
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Journal ArticleDOI
Label-free quantitation, an extension to 2DB
TL;DR: An extension to the 2DB database application, named MSMAG, is presented which allows for more detailed analysis of the distribution of peptides and their associated proteins over the fractions of an experiment, and given several biological samples in the database, label-free quantitation can be performed.
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Development of genomic simple sequence repeat markers in faba bean by next-generation sequencing
TL;DR: Testing of the genomic simple sequence repeat (SSR) markers showed that they were useful in determining genetic relationships and population structure in faba bean accessions.
Proceedings ArticleDOI
Distinguishing between MicroRNA Targets from Diverse Species using Sequence Motifs and K-mers.
TL;DR: This work investigated whether mi RNA targets from one species can be differentiated from miRNA targets of another and employed target information of one species as positive and the other as negative training and testing data to achieve this end.
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izMiR: computational ab initio microRNA detection
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PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes.
TL;DR: New functionality for PGMiner is presented which performs all proteogenomic steps like acquisition of mass spectrometric data, peptide identification against preprocessed sequence databases, assignment of statistical confidence to identified peptides, mapping confident peptides to gene models, and result visualization and extensions cover determining proteotypic peptides and thus unambiguous protein identification.