5.1. Detection Formats 475 5.2. Food Quality and Safety Analysis 477 5.2.1. Pathogens 477 5.2.2. Toxins 479 5.2.3. Veterinary Drugs 479 5.2.4. Vitamins 480 5.2.5. Hormones 480 5.2.6. Diagnostic Antibodies 480 5.2.7. Allergens 481 5.2.8. Proteins 481 5.2.9. Chemical Contaminants 481 5.3. Medical Diagnostics 481 5.3.1. Cancer Markers 481 5.3.2. Antibodies against Viral Pathogens 482 5.3.3. Drugs and Drug-Induced Antibodies 483 5.3.4. Hormones 483 5.3.5. Allergy Markers 483 5.3.6. Heart Attack Markers 484 5.3.7. Other Molecular Biomarkers 484 5.4. Environmental Monitoring 484 5.4.1. Pesticides 484 5.4.2. 2,4,6-Trinitrotoluene (TNT) 485 5.4.3. Aromatic Hydrocarbons 485 5.4.4. Heavy Metals 485 5.4.5. Phenols 485 5.4.6. Polychlorinated Biphenyls 487 5.4.7. Dioxins 487 5.5. Summary 488 6. Conclusions 489 7. Abbreviations 489 8. Acknowledgment 489 9. References 489

Surface Plasmon Resonance Sensors for Detection of Chemical and Biological Species

Surface plasmon resonance (SPR) biosensors are optical sensors exploiting special electromagnetic waves—surface plasmon-polaritons—to probe interactions between an analyte in solution and a biomolecular recognition element immobilized on the SPR sensor surface. Major application areas include detection of biological analytes and analysis of biomolecular interactions where SPR biosensors provide benefits of label-free real-time analytical technology. This paper reviews fundamentals of SPR affinity biosensors and discusses recent advances in development and applications of SPR biosensors.

Present and future of surface plasmon resonance biosensors.

Protein Immobilization Strategies for Protein Biochips

Towards integrated and sensitive surface plasmon resonance biosensors: a review of recent progress.

Zwitterionic polymers exhibiting high resistance to nonspecific protein adsorption from human serum and plasma

This paper reviews fundamentals of optical affinity biosensors based on plasmonic nanostructures and discusses recent advances in the development of this technology, including plasmonic nanostructures and surface plasmon phenomena, advances in sensor instrumentation, and functional coatings. Examples of applications for both the detection of chemical and biological substances as well as the investigation of biomolecular interactions are also given.

Optical Biosensors Based on Plasmonic Nanostructures: A Review

We have examined the noise sources for a surface plasmon resonance (SPR) sensor system to facilitate optimization of SPR sensor instrumentation and data-processing methods for high-resolution SPR sensing. We found detector shot noise to be the dominant source of noise in the SPR sensor, and investigated the propagation of noise through a commonly used SPR sensor data-processing algorithm. Deriving an expression relating the detector noise level to the noise of the output data, we used measurements of the magnitude and distribution of both charge-coupled device and photodiode array detector noise to predict the noise levels observed in the sensor output. We used this method to optimize the parameters of the algorithm and introduced a modified algorithm with enhanced resistance to correlated light level noise. In addition, we evaluated the noise performance of alternative SPR sensor designs, including a sensor with no polarization optics and another with optics producing an inverted SPR absorption feature. Experimental SPR sensor data demonstrated good agreement with predicted noise levels.

https://iopscience.iop.org/article/10.1088/0957-0233/13/12/332/pdf

Data analysis for optical sensors based on spectroscopy of surface plasmons

A stable and versatile biosensor surface is prepared by site-directed immobilization of protein−DNA conjugates onto a mixed self-assembled monolayer (SAM) composed of ssDNA thiols and oligo(ethylene glycol) (OEG) terminated thiols. The protein conjugates consist of an antibody chemically linked to a ssDNA target with a sequence complementary to the surface-bound ssDNA probes and are immobilized on the surface via sequence-specific hybridization. Compared to standard antibody immobilization techniques, this approach offers many advantages. The exceptional specificity of DNA hybridization combined with the diversity of potential sequences makes this platform perfect for multichannel sensors. Once a surface is patterned with the appropriate probe sequences, sequence-specific hybridization will sort out the target conjugates and direct them to the appropriate spots on the surface. In addition, the DNA SAMs are very stable and well suited to recycling by dehybdridization of the conjugates from the surface-boun...

DNA directed protein immobilization on mixed ssDNA/oligo(ethylene glycol) self-assembled monolayers for sensitive biosensors.

The simultaneous detection of multiple analytes is an important consideration for the advancement of biosensor technology. Currently, few sensor systems possess the capability to accurately and precisely detect multiple antigens. This work presents a simple approach for the functionalization of sensor surfaces suitable for multichannel detection. This approach utilizes self-assembled monolayer (SAM) chemistry to create a nonfouling, functional sensor platform based on biotinylated single-stranded DNA immobilized via a streptavidin bridge to a mixed SAM of biotinylated alkanethiol and oligo(ethylene glycol). Nonspecific binding is minimized with the nonfouling background of the sensor surface. A usable protein chip is generated by applying protein-DNA conjugates which are directed to specific sites on the sensor chip surface by utilizing the specificity of DNA hybridization. The described platform is demonstrated in a custom-built surface plasmon resonance biosensor. The detection capabilities of a sensor using this protein array have been characterized using human chorionic gonadotropin (hCG). The platform shows a higher sensitivity in detection of hCG than that observed using biotinylated antibodies. Results also show excellent specificity in protein immobilization to the proper locations in the array. The vast number of possible DNA sequences combine with the selectivity of base-pairing makes this platform an excellent candidate for a sensor capable of multichannel protein detection.

DNA-Directed Protein Immobilization on Mixed Self-Assembled Monolayers via a Streptavidin Bridge

In this work, we present an antibody array for the detection of cancer biomarker candidates by a surface plasmon resonance (SPR) imaging sensor with polarization contrast. Responses from the SPR imaging sensor are shown to be similar to those from a conventional spectroscopy-based SPR sensor. Antibodies are spotted onto a self-assembled monolayer (SAM) composed of oligo(ethylene glycol) (OEG)-containing alkanethiol chains. Detection of two cancer biomarker candidates, activated leukocyte cell adhesion molecule/CD 166 (ALCAM) and transgelin-2 (TAGLN2), is demonstrated. Limits of detection for ALCAM and TAGLN2 are established at 6 ng/mL and 3 ng/mL, respectively, in buffer. No cross-reactivity is observed between immobilized antibodies and nonspecific antigen. Biomarker candidates are also detected in a 10% human serum solution.

Jiri Homola

Papers

Optical Biosensors Based on Plasmonic Nanostructures: A Review

Data analysis for optical sensors based on spectroscopy of surface plasmons

DNA directed protein immobilization on mixed ssDNA/oligo(ethylene glycol) self-assembled monolayers for sensitive biosensors.

DNA-Directed Protein Immobilization on Mixed Self-Assembled Monolayers via a Streptavidin Bridge

Label-free detection of cancer biomarker candidates using surface plasmon resonance imaging