抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

The number of sequenced plant genomes and associated genomic resources is growing rapidly with the advent of both an increased focus on plant genomics from funding agencies, and the application of inexpensive next generation sequencing. To interact with this increasing body of data, we have developed Phytozome (http://www.phytozome.net), a comparative hub for plant genome and gene family data and analysis. Phytozome provides a view of the evolutionary history of every plant gene at the level of sequence, gene structure, gene family and genome organization, while at the same time providing access to the sequences and functional annotations of a growing number (currently 25) of complete plant genomes, including all the land plants and selected algae sequenced at the Joint Genome Institute, as well as selected species sequenced elsewhere. Through a comprehensive plant genome database and web portal, these data and analyses are available to the broader plant science research community, providing powerful comparative genomics tools that help to link model systems with other plants of economic and ecological importance.

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Phytozome: a comparative platform for green plant genomics

Microalgae represent an exceptionally diverse but highly specialized group of micro-organisms adapted to various ecological habitats. Many microalgae have the ability to produce substantial amounts (e.g. 20-50% dry cell weight) of triacylglycerols (TAG) as a storage lipid under photo-oxidative stress or other adverse environmental conditions. Fatty acids, the building blocks for TAGs and all other cellular lipids, are synthesized in the chloroplast using a single set of enzymes, of which acetyl CoA carboxylase (ACCase) is key in regulating fatty acid synthesis rates. However, the expression of genes involved in fatty acid synthesis is poorly understood in microalgae. Synthesis and sequestration of TAG into cytosolic lipid bodies appear to be a protective mechanism by which algal cells cope with stress conditions, but little is known about regulation of TAG formation at the molecular and cellular level. While the concept of using microalgae as an alternative and renewable source of lipid-rich biomass feedstock for biofuels has been explored over the past few decades, a scalable, commercially viable system has yet to emerge. Today, the production of algal oil is primarily confined to high-value specialty oils with nutritional value, rather than commodity oils for biofuel. This review provides a brief summary of the current knowledge on oleaginous algae and their fatty acid and TAG biosynthesis, algal model systems and genomic approaches to a better understanding of TAG production, and a historical perspective and path forward for microalgae-based biofuel research and commercialization.

https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2008.03492.x

Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances

The use of fossil fuels is now widely accepted as unsustainable due to depleting resources and the accumulation of greenhouse gases in the environment that have already exceeded the “dangerously high” threshold of 450 ppm CO2-e. To achieve environmental and economic sustainability, fuel production processes are required that are not only renewable, but also capable of sequestering atmospheric CO2. Currently, nearly all renewable energy sources (e.g. hydroelectric, solar, wind, tidal, geothermal) target the electricity market, while fuels make up a much larger share of the global energy demand (∼66%). Biofuels are therefore rapidly being developed. Second generation microalgal systems have the advantage that they can produce a wide range of feedstocks for the production of biodiesel, bioethanol, biomethane and biohydrogen. Biodiesel is currently produced from oil synthesized by conventional fuel crops that harvest the sun’s energy and store it as chemical energy. This presents a route for renewable and carbon-neutral fuel production. However, current supplies from oil crops and animal fats account for only approximately 0.3% of the current demand for transport fuels. Increasing biofuel production on arable land could have severe consequences for global food supply. In contrast, producing biodiesel from algae is widely regarded as one of the most efficient ways of generating biofuels and also appears to represent the only current renewable source of oil that could meet the global demand for transport fuels. The main advantages of second generation microalgal systems are that they: (1) Have a higher photon conversion efficiency (as evidenced by increased biomass yields per hectare): (2) Can be harvested batch-wise nearly all-year-round, providing a reliable and continuous supply of oil: (3) Can utilize salt and waste water streams, thereby greatly reducing freshwater use: (4) Can couple CO2-neutral fuel production with CO2 sequestration: (5) Produce non-toxic and highly biodegradable biofuels. Current limitations exist mainly in the harvesting process and in the supply of CO2 for high efficiency production. This review provides a brief overview of second generation biodiesel production systems using microalgae.

https://www.springer.com/cda/content/document/cda_downloaddocument/BioEnergyResearch_Second+Generation+Biofuels+High-Efficiency+Microalgae+for+Biodiesel+Production.pdf?SGWID=0-0-45-1347846-0

Second generation biofuels: high-efficiency microalgae for biodiesel production

▪ Abstract Proton-coupled electron transfer (PCET) is an important mechanism for charge transfer in a wide variety of systems including biology- and materials-oriented venues. We review several are...

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Proton-Coupled Electron Transfer

An intriguing architecture called semi-crystalline photosystem II (PSII) array has been observed in the thylakoid membranes in vascular plants. It is an array of PSIIlight harvesting complex II (LHCII) supercomplexes only appears in the low-light, whose functional role has not been clarified. We identified PSIILHCII supercomplexes in their monomeric and multimeric forms in the low-light acclimated spinach leaves and prepared them using sucrose density gradient-ultracentrifugation in the presence of amphipol A8-35. When the leaves were acclimated to high-light, however, only monomeric forms were present. Single particle electron microscopy identified that the multimeric PSIILHCII supercomplexes were composed of two (megacomplex) or three (arraycomplex) units of PSIILHCII supercomplexes, which aligned like a fraction of the semi-crystalline array. Further characterization using fluorescence analysis revealed that multimeric forms have a higher light-harvesting capability, but a lower thermal dissipation capability than the monomeric form, suggesting such a configurational conversion of PSIILHCII supercomplexes possibly serves as a structural basis for the plants acclimation to environmental light.

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Regulation of light harvesting in multimeric and monomeric photosystem II supercomplexes

Plants and algae have acquired the ability to acclimate to ever-changing environments to survive. During photosynthesis, light energy is converted into electrochemical energy by several membrane protein supercomplexes, which is used to fix CO2. The efficiency of photosynthesis is modulated by many environmental factors, including temperature, drought, CO2 concentration, and light. Recently, our understanding of such regulations of photosynthesis and the underlying molecular mechanisms has increased considerably. The photosynthetic supercomplexes undergo supramolecular reorganizations within a short time after receiving environmental cues. Two such representative reorganization events include state transitions that balance the excitation of the two photosystems and qE quenching that thermally dissipates excess energy at the level of the light-harvesting antenna. This chapter will focus on recent findings regarding the environmental regulation of photosynthesis in model organisms, paying particular attention to the unicellular green alga Chlamydomonas reinhardtii, illustrating the dynamic behavior of the photosynthetic machineries in nature.

Chlamydomonas: Bioenergetic Pathways—Regulation of Photosynthesis

In green plants, photosystem I (PSI) and photosystem II (PSII) bind to their respective light-harvesting complexes (LHCI and LHCII) to form the PSI-LHCI supercomplex and PSII-LHCII supercomplex, respectively. These supercomplexes further form megacomplexes, like the PSI-PSII and PSII-PSII in Arabidopsis (Arabidopsis thaliana) and spinach to modulate their light-harvesting properties, but not in the green alga Chlamydomonas reinhardtii. Here, we fractionated and characterized the stable rice PSI-PSII megacomplex. The delayed fluorescence from PSI (lifetime ~ 25 ns) indicated energy transfer capabilities between the two photosystems (energy spillover) in the rice PSI-PSII megacomplex. Fluorescence lifetime analysis revealed that the slow PSII to PSI energy transfer component was more dominant in the rice PSI-PSII supercomplexes than in Arabidopsis ones, suggesting that the PSI and PSII in rice form a megacomplex not directly but through LHCII molecule(s), which was further confirmed by negatively-stained EM-analysis. Our results suggest species diversity in the formation and stability of photosystem megacomplexes, and the stable PSI-PSII supercomplex in rice may reflect its structural adaptation.

Formation of a stable PSI-PSII megacomplex in rice that conducts energy spillover.

Aberrant Electron Transfer in D1-Y161F Mutant from Chlamydomonas Reinhardtii — A Donor-Side Photoinhibition

There is provided a method for generating an oil/fat component by means of culturing algae, in which marine algae belonging to chlamydomonas are cultured in a culture medium containing sea salt.

Jun Minagawa

Papers

Regulation of light harvesting in multimeric and monomeric photosystem II supercomplexes

Chlamydomonas: Bioenergetic Pathways—Regulation of Photosynthesis

Formation of a stable PSI-PSII megacomplex in rice that conducts energy spillover.

Aberrant Electron Transfer in D1-Y161F Mutant from Chlamydomonas Reinhardtii — A Donor-Side Photoinhibition

Method for generating oil/fat component from chlamydomonas algae