K
Kari Salokas
Researcher at University of Helsinki
Publications - 24
Citations - 347
Kari Salokas is an academic researcher from University of Helsinki. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 4, co-authored 10 publications receiving 134 citations.
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Journal ArticleDOI
An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations
Xiaonan Liu,Kari Salokas,Fitsum Tamene,Yaming Jiu,Rigbe G. Weldatsadik,Tiina Öhman,Markku Varjosalo +6 more
TL;DR: An integrated approach combining AP-MS and BioID in a single construct, which is term MAC-tag, enabling efficient determination of cellular protein locations and interaction distances and improving the understanding of the cellular interactome.
Journal ArticleDOI
Combined proximity labeling and affinity purification−mass spectrometry workflow for mapping and visualizing protein interaction networks
TL;DR: The Multiple Approaches Combined (MAC)-tag workflow is developed, which allows for both AP–MS and BioID analysis with a single construct and with almost identical protein purification and mass spectrometry (MS) identification procedures.
Journal ArticleDOI
Human transcription factor protein interaction networks
Helka Göös,Matias Kinnunen,Kari Salokas,Zenglai Tan,Xiaonan Liu,Leena Yadav,Qin Zhang,Gong-Hong Wei,Markku Varjosalo +8 more
TL;DR: In this article , the authors identify 6703 and 1536 protein-protein interactions for 109 different human TFs through proximity-dependent biotinylation (BioID) and affinity purification mass spectrometry (AP-MS), respectively.
Journal ArticleDOI
SARS-CoV-2-host proteome interactions for antiviral drug discovery.
Xiaonan Liu,Sini Huuskonen,Tuomo Laitinen,Taras A. Redchuk,Mariia S. Bogacheva,Kari Salokas,Ina Pöhner,Tiina Öhman,Arun Kumar Tonduru,Antti Hassinen,Lisa Gawriyski,Salla Keskitalo,Maria K. Vartiainen,Vilja Pietiäinen,Antti Poso,Markku Varjosalo +15 more
TL;DR: In this paper, the authors applied both affinity purification mass spectrometry (AP-MS) and the complementary proximity-based labeling method (BioID-MS), to map the interactions relevant to viral processing.
Posted ContentDOI
Human transcription factor protein interaction networks
Helka Göös,Matias Kinnunen,Leena Yadav,Zenglai Tan,Kari Salokas,Qin Zhang,Gong-Hong Wei,Markku Varjosalo +7 more
TL;DR: This study identified subgroups of TFs associated with specific biological functions, such as RNA-splicing, actin signalling or chromatin remodeling, and observed 203 TF-TF interactions, of which 175 were interactions with Nuclear Factor 1 -family members, indicating uncharacterized cross-talk between NFI signalling and numerous other TF signalling.