K
Katherine Phillippy
Researcher at National Institutes of Health
Publications - 11
Citations - 9182
Katherine Phillippy is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Gene & Gene expression profiling. The author has an hindex of 9, co-authored 11 publications receiving 7082 citations. Previous affiliations of Katherine Phillippy include University of California, San Diego & J. Craig Venter Institute.
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NCBI GEO: archive for functional genomics data sets—update
Tanya Barrett,Stephen E. Wilhite,Pierre Ledoux,Carlos Evangelista,Irene F. Kim,Maxim Tomashevsky,Kimberly A. Marshall,Katherine Phillippy,Patti M. Sherman,Michelle Holko,Andrey Yefanov,Hye Seung Lee,Naigong Zhang,Cynthia L. Robertson,Nadezhda Serova,Sean Davis,Alexandra Soboleva +16 more
TL;DR: The Gene Expression Omnibus is an international public repository for high-throughput microarray and next-generation sequence functional genomic data sets submitted by the research community and supports archiving of raw data, processed data and metadata which are indexed, cross-linked and searchable.
Journal ArticleDOI
NCBI GEO: archive for functional genomics data sets—10 years on
Tanya Barrett,Dennis B. Troup,Stephen E. Wilhite,Pierre Ledoux,Carlos Evangelista,Irene F. Kim,Maxim Tomashevsky,Kimberly A. Marshall,Katherine Phillippy,Patti M. Sherman,Rolf N. Muertter,Michelle Holko,Oluwabukunmi Ayanbule,Andrey Yefanov,Alexandra Soboleva +14 more
TL;DR: Recent database enhancements are described, including new search and data representation tools, as well as a brief review of how the community uses GEO data.
Journal ArticleDOI
NCBI GEO: archive for high-throughput functional genomic data
Tanya Barrett,Dennis B. Troup,Stephen E. Wilhite,Pierre Ledoux,Dmitry Rudnev,Carlos Evangelista,Irene F. Kim,Alexandra Soboleva,Maxim Tomashevsky,Kimberly A. Marshall,Katherine Phillippy,Patti M. Sherman,Rolf N. Muertter,Ron Edgar +13 more
TL;DR: The Gene Expression Omnibus at the National Center for Biotechnology Information (NCBI) is the largest public repository for high-throughput gene expression data and offers many tools and features that allow users to effectively explore, analyze and download expression data from both gene-centric and experiment-centric perspectives.
Journal ArticleDOI
Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102.
Sasha G. Tetu,B. Brahamsha,Daniel A. Johnson,Vera Tai,Katherine Phillippy,Katherine Phillippy,Brian Palenik,Ian T. Paulsen,Ian T. Paulsen +8 more
TL;DR: A high degree of overlap in the sets of genes affected by P stress conditions and in the knockout mutants supports this hypothesis; however, there is some indication that other regulators may be involved in this response in Synechococcus sp.
Journal ArticleDOI
High-throughput phenotypic characterization of Pseudomonas aeruginosa membrane transport genes.
Daniel A. Johnson,Sasha G. Tetu,Katherine Phillippy,Joan Chen,Qinghu Ren,Ian T. Paulsen,Ian T. Paulsen +6 more
TL;DR: This work utilized Biolog phenotype MicroArrays to identify phenotypes of gene knockout mutants in the opportunistic pathogen and versatile soil bacterium Pseudomonas aeruginosa in a relatively high-throughput fashion and showed the bioinformatic predictions to be largely correct in 22 out of 27 cases.