L
Laura Martinez
Publications - 5
Citations - 2535
Laura Martinez is an academic researcher. The author has contributed to research in topics: GENCODE & Ensembl. The author has an hindex of 4, co-authored 5 publications receiving 1320 citations.
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Journal ArticleDOI
GENCODE reference annotation for the human and mouse genomes.
Adam Frankish,Mark Diekhans,Anne-Maud Ferreira,Rory Johnson,Irwin Jungreis,Irwin Jungreis,Jane E. Loveland,Jonathan M. Mudge,Cristina Sisu,Cristina Sisu,James C. Wright,Joel Armstrong,If Barnes,Andrew Berry,Alexandra Bignell,Silvia Carbonell Sala,Jacqueline Chrast,Fiona Cunningham,Tomás Di Domenico,Sarah Donaldson,Ian T. Fiddes,Carlos García Girón,Jose Manuel Gonzalez,Tiago Grego,Matthew P. Hardy,Thibaut Hourlier,Toby Hunt,Osagie G. Izuogu,Julien Lagarde,Fergal J. Martin,Laura Martinez,Shamika Mohanan,Paul R. Muir,Fabio C. P. Navarro,Anne Parker,Baikang Pei,Fernando Pozo,Magali Ruffier,Bianca M. Schmitt,Eloise Stapleton,Marie-Marthe Suner,Irina Sycheva,Barbara Uszczynska-Ratajczak,Jinuri Xu,Andrew D. Yates,Daniel R. Zerbino,Yan Zhang,Yan Zhang,Bronwen Aken,Jyoti S. Choudhary,Mark Gerstein,Roderic Guigó,Tim Hubbard,Manolis Kellis,Manolis Kellis,Benedict Paten,Alexandre Reymond,Michael L. Tress,Paul Flicek +58 more
TL;DR: This work generates primary data, creates bioinformatics tools and provides analysis to support the work of expert manual gene annotators and automated gene annotation pipelines to identify and characterise gene loci to the highest standard.
Journal ArticleDOI
Gencode 2021
Adam Frankish,Mark Diekhans,Irwin Jungreis,Julien Lagarde,Jane E. Loveland,Jonathan M. Mudge,Cristina Sisu,James C. Wright,Joel Armstrong,If Barnes,Andrew Berry,Alexandra Bignell,Carles Boix,S. Carbonell Sala,Fiona Cunningham,T. Di Domenico,Sarah Donaldson,Ian T. Fiddes,C. Garcia Giron,José M. González,Tiago Grego,Matthew Hardy,Thibaut Hourlier,Kerstin Howe,Toby Hunt,Osagie G. Izuogu,Rory Johnson,Fergal J. Martin,Laura Martinez,S. Mohanan,Paul R. Muir,Fabio C. P. Navarro,Anne Parker,Baikang Pei,Fernando Pozo,F. C. Riera,Magali Ruffier,Bianca M. Schmitt,E. Stapleton,Marie Marthe Suner,I. Sycheva,Barbara Uszczynska-Ratajczak,Maxim Y Wolf,Jinrui Xu,Y. T. Yang,Andrew D. Yates,Daniel R. Zerbino,Yan Zhang,Jyoti S. Choudhary,Mark Gerstein,Roderic Guigó,Tim Hubbard,Manolis Kellis,Benedict Paten,Michael L. Tress,Paul Flicek +55 more
TL;DR: The GENCODE project annotates human and mouse genes and transcripts supported by experimental data with high accuracy, providing a foundational resource that supports genome biology and clinical genomics as mentioned in this paper. But the annotation process does not support the creation of transcript structures and the determination of their function.
Journal ArticleDOI
Loose ends: almost one in five human genes still have unresolved coding status
Federico Abascal,David Juan,Irwin Jungreis,Manolis Kellis,Laura Martinez,Maria Rigau,Jose Manuel Rodriguez,Jesús Vázquez,Michael L. Tress +8 more
TL;DR: An in-depth investigation on the 2764 genes classified as coding by one or more sets of manual curators and not coding by others suggests that most are not under protein-like purifying selection and so are unlikely to code for functional proteins.
Posted Content
Genie: A Secure, Transparent Sharing and Services Platform for Genetic and Health Data.
Shifa Zhang,Anne Kim,Dianbo Liu,Sandeep C. Nuckchadyy,Lauren Huang,Aditya Masurkar,Jingwei Zhang,Lawrence Tseng,Pratheek Karnati,Laura Martinez,Thomas Hardjono,Manolis Kellis,Zhizhuo Zhang +12 more
TL;DR: The platform combines the security of Intel Software Guarded eXtensions (SGX), transparency of blockchain technology, and verifiability of open algorithms and source codes to allow AI models to be trained on medical data securely.
Journal ArticleDOI
Corrigendum: Loose ends: almost one in five human genes still have unresolved coding status.
Federico Abascal,David Juan,Irwin Jungreis,Manolis Kellis,Laura Martinez,Maria Rigau,Jose Manuel Rodriguez,Jesús Vázquez,Michael L. Tress +8 more
TL;DR: This paper presents a meta-analyses of the proteomics results obtained in a pilot study at the Barcelona Supercomputing Center using the Higgs boson gene, a type of “supercomputer” designed to distinguish between “clean” and “dirty” DNA samples.