Ludovic C Gillet

TL;DR: A new strategy that systematically queries sample sets for the presence and quantity of essentially any protein of interest is presented, using the information available in fragment ion spectral libraries to mine the complete fragment ion maps generated using a data-independent acquisition method.

TL;DR: This research presents a novel and scalable approaches that allow for real-time measurement of the response of the immune system to treatments such as chemotherapy and immunotherapy.

TL;DR: This tutorial provides guidelines on how to set up and plan a SWATH‐MS experiment, how to perform the mass spectrometric measurement and how to analyse SWath‐MS data using peptide‐centric scoring.

TL;DR: This work uses a fast and reproducible conversion of a small amount of tissue into a single, permanent digital file representing the mass spectrometry (MS)-measurable proteome of the sample to process and convert 18 biopsy samples from nine patients with renal cell carcinoma into SWATH-MS fragment ion maps.