M
Maria D. Paraskevopoulou
Researcher at Tufts Medical Center
Publications - 37
Citations - 6590
Maria D. Paraskevopoulou is an academic researcher from Tufts Medical Center. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 18, co-authored 30 publications receiving 4903 citations. Previous affiliations of Maria D. Paraskevopoulou include National Technical University of Athens & Academy of Athens.
Papers
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Journal ArticleDOI
DIANA-miRPath v3.0: deciphering microRNA function with experimental support
Ioannis S. Vlachos,Ioannis S. Vlachos,Konstantinos Zagganas,Maria D. Paraskevopoulou,Georgios Georgakilas,Dimitra Karagkouni,Thanasis Vergoulis,Theodore Dalamagas,Artemis G. Hatzigeorgiou +8 more
TL;DR: DIANA-miRPath v3.0 is an online software suite dedicated to the assessment of miRNA regulatory roles and the identification of controlled pathways and its redesigned Reverse Search module enables users to identify and visualize miRNAs significantly controlling selected pathways or belonging to specific GO categories.
Journal ArticleDOI
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows
Maria D. Paraskevopoulou,Georgios Georgakilas,Nikos Kostoulas,Ioannis S. Vlachos,Thanasis Vergoulis,Martin Reczko,Christos Filippidis,Theodore Dalamagas,Artemis G. Hatzigeorgiou +8 more
TL;DR: DIANA-microT v5.0, the new version of the microT server, has been significantly enhanced with an improved target prediction algorithm, DIANA- microT-CDS, which has been updated to incorporate miRBase version 18 and Ensembl version 69.
Journal ArticleDOI
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.
Dimitra Karagkouni,Dimitra Karagkouni,Maria D. Paraskevopoulou,Serafeim Chatzopoulos,Ioannis S. Vlachos,Ioannis S. Vlachos,Spyros Tastsoglou,Spyros Tastsoglou,Ilias Kanellos,Dimitris Papadimitriou,Dimitris Papadimitriou,Ioannis Kavakiotis,Ioannis Kavakiotis,Sofia Maniou,Giorgos Skoufos,Giorgos Skoufos,Thanasis Vergoulis,Theodore Dalamagas,Artemis G. Hatzigeorgiou,Artemis G. Hatzigeorgiou +19 more
TL;DR: DIANA-TarBase v8 is a reference database devoted to the indexing of experimentally supported microRNA (miRNA) targets, and its eighth version is the first database indexing >1 million entries, corresponding to ∼670 000 unique miRNA-target pairs.
Journal ArticleDOI
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions
Ioannis S. Vlachos,Ioannis S. Vlachos,Maria D. Paraskevopoulou,Dimitra Karagkouni,Georgios Georgakilas,Thanasis Vergoulis,Ilias Kanellos,Ioannis-Laertis Anastasopoulos,Sofia Maniou,Konstantina Karathanou,Despoina Kalfakakou,Athanasios Fevgas,Theodore Dalamagas,Artemis G. Hatzigeorgiou +13 more
TL;DR: DIANA-TarBase v7.0 aims to provide for the first time hundreds of thousands of high-quality manually curated experimentally validated miRNA:gene interactions, enhanced with detailed meta-data, which enables users to easily identify positive or negative experimental results, the utilized experimental methodology, experimental conditions including cell/tissue type and treatment.
Book ChapterDOI
Analyzing MiRNA-LncRNA Interactions.
TL;DR: This chapter focuses on the study of miRNA-lncRNA interactions with either in silico or experimentally supported analyses, and proposes methodologies that can be appropriately adapted in order to become the backbone of advanced multistep functional miRNA analyses.