T
Thanasis Vergoulis
Researcher at Institute for the Management of Information Systems
Publications - 58
Citations - 6661
Thanasis Vergoulis is an academic researcher from Institute for the Management of Information Systems. The author has contributed to research in topics: Computer science & Ranking (information retrieval). The author has an hindex of 15, co-authored 47 publications receiving 5416 citations. Previous affiliations of Thanasis Vergoulis include Martin Luther University of Halle-Wittenberg & University of Thessaly.
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Journal ArticleDOI
DIANA-miRPath v3.0: deciphering microRNA function with experimental support
Ioannis S. Vlachos,Ioannis S. Vlachos,Konstantinos Zagganas,Maria D. Paraskevopoulou,Georgios Georgakilas,Dimitra Karagkouni,Thanasis Vergoulis,Theodore Dalamagas,Artemis G. Hatzigeorgiou +8 more
TL;DR: DIANA-miRPath v3.0 is an online software suite dedicated to the assessment of miRNA regulatory roles and the identification of controlled pathways and its redesigned Reverse Search module enables users to identify and visualize miRNAs significantly controlling selected pathways or belonging to specific GO categories.
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DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows
Maria D. Paraskevopoulou,Georgios Georgakilas,Nikos Kostoulas,Ioannis S. Vlachos,Thanasis Vergoulis,Martin Reczko,Christos Filippidis,Theodore Dalamagas,Artemis G. Hatzigeorgiou +8 more
TL;DR: DIANA-microT v5.0, the new version of the microT server, has been significantly enhanced with an improved target prediction algorithm, DIANA- microT-CDS, which has been updated to incorporate miRBase version 18 and Ensembl version 69.
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DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.
Dimitra Karagkouni,Dimitra Karagkouni,Maria D. Paraskevopoulou,Serafeim Chatzopoulos,Ioannis S. Vlachos,Ioannis S. Vlachos,Spyros Tastsoglou,Spyros Tastsoglou,Ilias Kanellos,Dimitris Papadimitriou,Dimitris Papadimitriou,Ioannis Kavakiotis,Ioannis Kavakiotis,Sofia Maniou,Giorgos Skoufos,Giorgos Skoufos,Thanasis Vergoulis,Theodore Dalamagas,Artemis G. Hatzigeorgiou,Artemis G. Hatzigeorgiou +19 more
TL;DR: DIANA-TarBase v8 is a reference database devoted to the indexing of experimentally supported microRNA (miRNA) targets, and its eighth version is the first database indexing >1 million entries, corresponding to ∼670 000 unique miRNA-target pairs.
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DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions
Ioannis S. Vlachos,Ioannis S. Vlachos,Maria D. Paraskevopoulou,Dimitra Karagkouni,Georgios Georgakilas,Thanasis Vergoulis,Ilias Kanellos,Ioannis-Laertis Anastasopoulos,Sofia Maniou,Konstantina Karathanou,Despoina Kalfakakou,Athanasios Fevgas,Theodore Dalamagas,Artemis G. Hatzigeorgiou +13 more
TL;DR: DIANA-TarBase v7.0 aims to provide for the first time hundreds of thousands of high-quality manually curated experimentally validated miRNA:gene interactions, enhanced with detailed meta-data, which enables users to easily identify positive or negative experimental results, the utilized experimental methodology, experimental conditions including cell/tissue type and treatment.
Journal ArticleDOI
DIANA-microT web server: elucidating microRNA functions through target prediction
Manolis Maragkakis,Martin Reczko,Victor A. Simossis,Panagiotis Alexiou,Giorgos L. Papadopoulos,Theodore Dalamagas,Giorgos Giannopoulos,Georgios Goumas,Evangelos Koukis,Kornilios Kourtis,Thanasis Vergoulis,Nectarios Koziris,Timos Sellis,Panayotis Tsanakas,Artemis G. Hatzigeorgiou +14 more
TL;DR: TheDIANA-microT web server is presented as the user interface to the DIANA- microT 3.0 miRNA target prediction algorithm, providing extensive information for predicted miRNA:target gene interactions with a user-friendly interface, and providing extensive connectivity to online biological resources.