When Szent-Gyorgyi called water the “matrix of life”,1 he was echoing an old sentiment. Paracelsus in the 16th century said that “water was the matrix of the world and of all its creatures.”2 But Paracelsus’s notion of a matrixsan active substance imbued with fecund, life-giving propertiess was quite different from the picture that, until very recently, molecular biologists have tended to hold of water’s role in the chemistry of life. Although acknowledging that liquid water has some unusual and important physical and chemical propertiessits potency as a solvent, its ability to form hydrogen bonds, its amphoteric naturesbiologists have regarded it essentially as the backdrop on which life’s molecular components are arrayed. It used to be common practice, for example, to perform computer simulations of biomolecules in a vacuum. Partly this was because the computational intensity of simulating a polypeptide chain was challenging even without accounting for solvent molecules too, but it also reflected the prevailing notion that water does little more than temper or moderate the basic physicochemical interactions responsible for molecular biology. What Gerstein and Levitt said 9 years ago remains true today: “When scientists publish models of biological molecules in journals, they usually draw their models in bright colors and place them against a plain, black background”.3 Curiously, this neglect of water as an active component of the cell went hand in hand with the assumption that life could not exist without it. That was basically an empirical conclusion derived from our experience of life on Earth: environments without liquid water cannot sustain life, and special strategies are needed to cope with situations in which, because of extremes of either heat or cold, the liquid is scarce.4-6 The recent confirmation that there is at least one world rich in organic molecules on which rivers and perhaps shallow seas or bogs are filled with nonaqueous fluidsthe liquid hydrocarbons of Titan7smight now bring some focus, even urgency, to the question of whether water is indeed a * E-mail: p.ball@nature.com. Philip Ball is a science writer and a consultant editor for Nature, where he worked as an editor for physical sciences for more than 10 years. He holds a Ph.D. in physics from the University of Bristol, where he worked on the statistical mechanics of phase transitions in the liquid state. His book H2O: A Biography of Water (Weidenfeld & Nicolson, 1999) was a survey of the current state of knowledge about the behavior of water in situations ranging from planetary geomorphology to cell biology. He frequently writes about aspects of water science for both the popular and the technical media.

https://www.philipball.co.uk/images/stories/docs/pdf/ChemRev_final.pdf

Water as an Active Constituent in Cell Biology

Until recently, “room-temperature” (<100–150 °C) liquid-state electrochemistry was mostly electrochemistry of diluted electrolytes(1)–(4) where dissolved salt ions were surrounded by a considerable amount of solvent molecules. Highly concentrated liquid electrolytes were mostly considered in the narrow (albeit important) niche of high-temperature electrochemistry of molten inorganic salts(5-9) and in the even narrower niche of “first-generation” room temperature ionic liquids, RTILs (such as chloro-aluminates and alkylammonium nitrates).(10-14) The situation has changed dramatically in the 2000s after the discovery of new moisture- and temperature-stable RTILs.(15, 16) These days, the “later generation” RTILs attracted wide attention within the electrochemical community.(17-31) Indeed, RTILs, as a class of compounds, possess a unique combination of properties (high charge density, electrochemical stability, low/negligible volatility, tunable polarity, etc.) that make them very attractive substances from fundamental and application points of view.(32-38) Most importantly, they can mix with each other in “cocktails” of one’s choice to acquire the desired properties (e.g., wider temperature range of the liquid phase(39, 40)) and can serve as almost “universal” solvents.(37, 41, 42) It is worth noting here one of the advantages of RTILs as compared to their high-temperature molten salt (HTMS)(43) “sister-systems”.(44) In RTILs the dissolved molecules are not imbedded in a harsh high temperature environment which could be destructive for many classes of fragile (organic) molecules.

/pdf/ionic-liquids-at-electrified-interfaces-4n93eaytys.pdf

Ionic Liquids at Electrified Interfaces

Feature size is a natural determinant of material properties. Its design offers the technological perspectives for material improvement. Grain size, crystallite size, domain width, and structural defects of different nature constitute the classical design elements. Common ferroelectric ceramics contain micrometer grain sizes and submicrometer domain widths. Domain wall mobility is a major contribution to their macroscopic material properties providing approximately half of the macroscopic output in optimized materials. The extension into the dynamic nanoworld is provided by relaxor ferroelectrics. Ionic and nanoscale field disorders form the base to a state with natural nanometer-size polar structures even in bulk materials. These polar structures are highly mobile and can dynamically change over several orders of magnitude in time and space being extremely sensitive to external stimuli. This yields among the largest dielectric and piezoelectric constants known. In this feature article, we want to outline how lead-free relaxors will offer a route to an environmentally safer option in this outstanding material class. Properties of uniaxial, planar, and volumetric relaxor compositions will be discussed. They provide a broader and more interesting scope of physical properties and features than the classical lead-containing relaxor compositions.

Lead-Free Relaxor Ferroelectrics

We report direct observation of an unexpected anisotropic swelling of Si nanowires during lithiation against either a solid electrolyte with a lithium counter-electrode or a liquid electrolyte with a LiCoO2 counter-electrode. Such anisotropic expansion is attributed to the interfacial processes of accommodating large volumetric strains at the lithiation reaction front that depend sensitively on the crystallographic orientation. This anisotropic swelling results in lithiated Si nanowires with a remarkable dumbbell-shaped cross section, which develops due to plastic flow and an ensuing necking instability that is induced by the tensile hoop stress buildup in the lithiated shell. The plasticity-driven morphological instabilities often lead to fracture in lithiated nanowires, now captured in video. These results provide important insight into the battery degradation mechanisms.

Anisotropic Swelling and Fracture of Silicon Nanowires during Lithiation

Water molecules confined to nonpolar pores and cavities of nanoscopic dimensions exhibit highly unusual properties. Water filling is strongly cooperative, with the possible coexistence of filled and empty states and sensitivity to small perturbations of the pore polarity and solvent conditions. Confined water molecules form tightly hydrogen-bonded wires or clusters. The weak attractions to the confining wall, combined with strong interactions between water molecules, permit exceptionally rapid water flow, exceeding expectations from macroscopic hydrodynamics by several orders of magnitude. The proton mobility along 1D water wires also substantially exceeds that in the bulk. Proteins appear to exploit these unusual properties of confined water in their biological function (e.g., to ensure rapid water flow in aquaporins or to gate proton flow in proton pumps and enzymes). The unusual properties of water in nonpolar confinement are also relevant to the design of novel nanofluidic and molecular separation devices or fuel cells.

/pdf/water-in-nonpolar-confinement-from-nanotubes-to-proteins-and-412uecrowv.pdf

Water in Nonpolar Confinement: From Nanotubes to Proteins and Beyond *

The hydration behavior of two planar nanoscopic hydrophobic solutes in liquid water at normal temperature and pressure is investigated by calculating the potential of mean force between them at constant pressure as a function of the solute-solvent interaction potential. The importance of the effect of weak attractive interactions between the solute atoms and the solvent on the hydration behavior is clearly demonstrated. We focus on the underlying mechanism behind the contrasting results obtained in various recent experimental and computational studies on water near hydrophobic solutes. The length scale where crossover from a solvent separated state to the contact pair state occurs is shown to depend on the solute sizes as well as on details of the solute-solvent interaction. We find the mechanism for attractive mean forces between the plates is very different depending on the nature of the solute-solvent interaction which has implications for the mechanism of the hydrophobic effect for biomolecules.

On the mechanism of hydrophobic association of nanoscopic solutes.

Neutron diffraction studies using powder samples have been used to understand the complex sequence of low temperature phase transitions of $\mathrm{Na}\mathrm{Nb}{\mathrm{O}}_{3}$ in the temperature range from $12\phantom{\rule{0.3em}{0ex}}\text{to}\phantom{\rule{0.3em}{0ex}}350\phantom{\rule{0.3em}{0ex}}\mathrm{K}$. Detailed Rietveld analysis of the diffraction data reveals that the antiferroelectric to ferroelectric phase transition occurs on cooling around $73\phantom{\rule{0.3em}{0ex}}\mathrm{K}$, while the reverse ferroelectric to antiferroelectric transition occurs on heating at $245\phantom{\rule{0.3em}{0ex}}\mathrm{K}$. However, the former transformation is not complete until it reaches $12\phantom{\rule{0.3em}{0ex}}\mathrm{K}$ and there is unambiguous evidence for the presence of the ferroelectric $R3c$ phase coexisting with an antiferroelectic phase $(Pbcm)$ over a wide range of temperatures. The coexisting phases and reported anomalous smearing of the dielectric response akin to dipole glasses and relaxors observed in the same temperature range are consistent with competing ferroelectric and antiferroelectric interactions in $\mathrm{Na}\mathrm{Nb}{\mathrm{O}}_{3}$. We have carried out theoretical lattice dynamical calculations which reveal that the free energies of the antiferroelectric $Pbcm$ and ferroelectric $R3c$ phases are nearly identical over a wide range of temperature. The small energy difference between the two phases is of interest as it explains the observed coexistence of these phases over a wide range of temperature. The computed double well depths and energy barriers from paraelectric $Pm\overline{3}m$ to antiferroelectric $Pbcm$ and ferroelectric $R3c$ phases in $\mathrm{Na}\mathrm{Nb}{\mathrm{O}}_{3}$ are also quite similar, although the ferroelectric $R3c$ phase has a slightly lower energy.

https://arxiv.org/pdf/cond-mat/0703365.pdf

Competing antiferroelectric and ferroelectric interactions in Na Nb O 3 : Neutron diffraction and theoretical studies

We describe the model dynamical behavior of the solvent between two nanoscopic hydrophobic solutes. The dynamics of the vicinal water in various sized traps is found to be significantly different from bulk behavior. We consider the dynamics at normal temperature and pressure at three intersolute distances corresponding to the three solvent separated minima in the free energy profile between the solutes with attractions. These three states correspond to one, two, and three intervening layers of water molecules. Results are obtained from a molecular dynamics simulation at constant temperature and pressure (NPT) ensemble. Translational diffusion of water molecules trapped between the two solutes has been analyzed from the velocity correlation function as well as from the mean square displacement of the water molecules. The rotational behavior has been analyzed through the reorientational dynamics of the dipole moment vector of the water molecule by calculating both first and second rank dipole-dipole correlation functions. Both the translational and reorientational mobilities of water are found to be much slower at the smaller separation and increases as the separation between solutes becomes larger. The occupation time distribution functions calculated from the trajectories also show that the relaxation is much slower for the smallest intersolute separation as compared to other wider separations. The sublinear trend in mean square displacement and the stretched exponential decay of the relaxation of dipolar correlation and occupation distribution function indicate that the dynamical behavior of water in the confined region between two large hydrophobic solutes departs from usual Brownian behavior. This behavior is reminiscent of the behavior of water in the vicinity of protein surface clefts or trapped between two domains of a protein.

Dynamics of water trapped between hydrophobic solutes.

A molecular-level description of the behavior of water in hydrophobic spaces is presented in terms of the coupled effects of solute size and atomic solute-solvent interactions. For model solutes with surface areas near those of protein contacts, we identify three different regions of solute-water interaction to be associated with three distinctly different structural characteristics of water in the intersolute region: dry, oscillating, and wet. A first orderlike phase transition is confirmed from the wet to dry state bridged by a narrow region with liquid-vapor oscillations in the intersolute region as the strength of the solute-water attractive dispersion interaction decreases. We demonstrate that the recent idea that cavitation in the intersolute region of nanoscopic solutes is preceded by the formation of a vapor layer around an individual solute is not the general case. The appearance of density waves pulled up around and outside of a nanoscopic plate occurs at lower interaction strengths than are required to obtain a wet state between such plates. We further show that chemically reasonable estimates of the interaction strength lead to a microscopically wet state and a hydrophobic interaction characterized by traps and barriers to association and not by vacuum induced collapse.

/pdf/the-dewetting-transition-and-the-hydrophobic-effect-4a7zwt64d4.pdf

The dewetting transition and the hydrophobic effect

Entropic and enthalpic contributions to the hydrophobic interaction between nanoscopic hydrophobic solutes, modeled as graphene plates in water, have been calculated using molecular dynamics simulations in the isothermal-isobaric (NPT) ensemble with free energy perturbation methodology. We find the stabilizing contribution to the free energy of association (contact pair formation) to be the favorable entropic part, the enthalpic contribution being highly unfavorable. The desolvation barrier is dominated by the unfavorable enthalpic contribution, despite a fairly large favorable entropic compensation. The enthalpic contributions, incorporating the Lennard-Jones solute-solvent terms, largely determine the stability of the solvent separated configuration. We decompose the enthalpy into a direct solute-solute term, the solute-solvent interactions, and the remainder that contains pressure-volume work as well as contributions due to solvent reorganization. The enthalpic contribution due to changes in water-water interactions arising from solvent reorganization around the solute molecules is shown to have major contribution in the solvent induced enthalpy change.

/pdf/enthalpy-entropy-contributions-to-the-potential-of-mean-2rwefiulef.pdf

Niharendu Choudhury

Papers

On the mechanism of hydrophobic association of nanoscopic solutes.

Competing antiferroelectric and ferroelectric interactions in Na Nb O 3 : Neutron diffraction and theoretical studies

Dynamics of water trapped between hydrophobic solutes.

The dewetting transition and the hydrophobic effect

Enthalpy-entropy contributions to the potential of mean force of nanoscopic hydrophobic solutes.