N
Nikolay Vyahhi
Researcher at Saint Petersburg Academic University
Publications - 13
Citations - 22980
Nikolay Vyahhi is an academic researcher from Saint Petersburg Academic University. The author has contributed to research in topics: Computer science & Set (abstract data type). The author has an hindex of 8, co-authored 10 publications receiving 16491 citations. Previous affiliations of Nikolay Vyahhi include Saint Petersburg State University & University of California, San Diego.
Papers
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Book ChapterDOI
From de bruijn graphs to rectangle graphs for genome assembly
TL;DR: It is demonstrated that addressing challenges encountered in applications of rectangle graphs in genome assembly results in an assembler SPAdes+ that improves on existing assembly algorithms in the case of bacterial genomes (including particularly difficult case of genome assemblies from single cells).
Posted Content
Sibelia: A scalable and comprehensive synteny block generation tool for closely related microbial genomes
Ilya Minkin,Ilya Minkin,Anand Patel,Anand Patel,Mikhail Kolmogorov,Mikhail Kolmogorov,Nikolay Vyahhi,Nikolay Vyahhi,Son Pham,Son Pham +9 more
TL;DR: Sibelia as discussed by the authors is a tool for finding synteny blocks in multiple closely related microbial genomes using iterative de Bruijn graphs, which can find similar blocks that are repeated within genomes and blocks shared by multiple genomes.
Book ChapterDOI
Tracking Moving Objects in Anonymized Trajectories
TL;DR: This paper introduces a novel method that transforms the tracking problem into a min-cost max-flow problem, and utilizes well-known graph algorithms that work in polynomial time with respect to the number of objects.
Journal ArticleDOI
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability
Jing-Woei Li,Dan Bolser,Magnus Manske,Federico M. Giorgi,Nikolay Vyahhi,Björn Usadel,Bernardo J. Clavijo,Ting-Fung Chan,Nathalie Wong,Daniel R. Zerbino,Maria Victoria Schneider +10 more
TL;DR: The NGS WikiBook aims to create a collective laboratory book and protocol that explains the key concepts and describes best practices in this fast-evolving field, an approach helped by the open-source nature of many NGS programmes.
Proceedings ArticleDOI
Hyperstyle
Anastasiia Birillo,Ilya Vlasov,A. V. Burylov,Vitalii Selishchev,Artyom Goncharov,Elena Tikhomirova,Nikolay Vyahhi,Timofey Bryksin +7 more
TL;DR: Hyperstyle as mentioned in this paper is a tool that supports four programming languages (Python, Java, Kotlin, and Javascript) and can be used as a standalone tool or integrated into a MOOC platform.