Data Mining - Concepts and Techniques.

BIOE 402. Medical Technology Assessment. 2 or 3 hours. Bioentrepreneur course. Assessment of medical technology in the context of commercialization. Objectives, competition, market share, funding, pricing, manufacturing, growth, and intellectual property; many issues unique to biomedical products. Course Information: 2 undergraduate hours. 3 graduate hours. Prerequisite(s): Junior standing or above and consent of the instructor.

“Bioinformatics” 특집을 내면서

The book Knowledge Discovery in Databases, edited by Piatetsky-Shapiro and Frawley [PSF91], is an early collection of research papers on knowledge discovery from data. The book Advances in Knowledge Discovery and Data Mining, edited by Fayyad, Piatetsky-Shapiro, Smyth, and Uthurusamy [FPSSe96], is a collection of later research results on knowledge discovery and data mining. There have been many data mining books published in recent years, including Predictive Data Mining by Weiss and Indurkhya [WI98], Data Mining Solutions: Methods and Tools for Solving Real-World Problems by Westphal and Blaxton [WB98], Mastering Data Mining: The Art and Science of Customer Relationship Management by Berry and Linofi [BL99], Building Data Mining Applications for CRM by Berson, Smith, and Thearling [BST99], Data Mining: Practical Machine Learning Tools and Techniques by Witten and Frank [WF05], Principles of Data Mining (Adaptive Computation and Machine Learning) by Hand, Mannila, and Smyth [HMS01], The Elements of Statistical Learning by Hastie, Tibshirani, and Friedman [HTF01], Data Mining: Introductory and Advanced Topics by Dunham, and Data Mining: Multimedia, Soft Computing, and Bioinformatics by Mitra and Acharya [MA03]. There are also books containing collections of papers on particular aspects of knowledge discovery, such as Machine Learning and Data Mining: Methods and Applications edited by Michalski, Brakto, and Kubat [MBK98], and Relational Data Mining edited by Dzeroski and Lavrac [De01], as well as many tutorial notes on data mining in major database, data mining and machine learning conferences.

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Data Mining: Concepts and Techniques (2nd edition)

Matrix Factorization Techniques for Recommender Systems

We explore the effect of dimensionality on the nearest neighbor problem. We show that under a broad set of conditions (much broader than independent and identically distributed dimensions), as dimensionality increases, the distance to the nearest data point approaches the distance to the farthest data point. To provide a practical perspective, we present empirical results on both real and synthetic data sets that demonstrate that this effect can occur for as few as 10-15 dimensions. These results should not be interpreted to mean that high-dimensional indexing is never meaningful; we illustrate this point by identifying some high-dimensional workloads for which this effect does not occur. However, our results do emphasize that the methodology used almost universally in the database literature to evaluate high-dimensional indexing techniques is flawed, and should be modified. In particular, most such techniques proposed in the literature are not evaluated versus simple linear scan, and are evaluated over workloads for which nearest neighbor is not meaningful. Often, even the reported experiments, when analyzed carefully, show that linear scan would outperform the techniques being proposed on the workloads studied in high (10-15) dimensionality!.

When is nearest neighbor meaningful

Many propagation and search algorithms have been developed for constraint satisfaction problems (CSPs). In a standard CSP all variables are existentially quantified. The CSP formalism can be extended to allow universally quantified variables, in which case the complexity of the basic reasoning tasks rises from NP-complete to PSPACE-complete. Such problems have, so far, been studied mainly in the context of quantified Boolean formulae. Little work has been done on problems with discrete non-Boolean domains. We attempt to fill this gap by extending propagation and search algorithms from standard CSPs to the quantified case. We also show how the notion of value interchangeability can be exploited to break symmetries and speed up search by orders of magnitude. Finally, we test experimentally the algorithms and methods proposed.

Algorithms for quantified constraint satisfaction problems

This paper introduces a scalable approach for probabilistic top-k similarity ranking on uncertain vector data. Each uncertain object is represented by a set of vector instances that is assumed to be mutually exclusive. The objective is to rank the uncertain data according to their distance to a reference object. We propose a framework that incrementally computes for each object instance and ranking position, the probability of the object falling at that ranking position. The resulting rank probability distribution can serve as input for several state-of-the-art probabilistic ranking models. Existing approaches compute this probability distribution by applying the Poisson binomial recurrence technique of quadratic complexity. In this paper, we theoretically as well as experimentally show that our framework reduces this to a linear-time complexity while having the same memory requirements, facilitated by incremental accessing of the uncertain vector instances in increasing order of their distance to the reference object. Furthermore, we show how the output of our method can be used to apply probabilistic top-k ranking for the objects, according to different state-of-the-art definitions. We conduct an experimental evaluation on synthetic and real data, which demonstrates the efficiency of our approach.

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Scalable Probabilistic Similarity Ranking in Uncertain Databases

Finding frequent itemsets is the most costly task in association rule mining. Outsourcing this task to a service provider brings several benefits to the data owner such as cost relief and a less commitment to storage and computational resources. Mining results, however, can be corrupted if the service provider (i) is honest but makes mistakes in the mining process, or (ii) is lazy and reduces costly computation, returning incomplete results, or (iii) is malicious and contaminates the mining results. We address the integrity issue in the outsourcing process, i.e., how the data owner verifies the correctness of the mining results. For this purpose, we propose and develop an audit environment, which consists of a database transformation method and a result verification method. The main component of our audit environment is an artificial itemset planting (AIP) technique. We provide a theoretical foundation on our technique by proving its appropriateness and showing probabilistic guarantees about the correctness of the verification process. Through analytical and experimental studies, we show that our technique is both effective and efficient.

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An audit environment for outsourcing of frequent itemset mining

A top-k query combines different rankings of the same set of objects and returns the k objects with the highest combined score according to an aggregate function. We bring to light some key observations, which impose two phases that any top-k algorithm, based on sorted accesses, should go through. Based on them, we propose a new algorithm, which is designed to minimize the number of object accesses, the computational cost, and the memory requirements of top-k search. Adaptations of our algorithm for search variants (exact scores, on-line and incremental search, top-k joins, other aggregate functions, etc.) are also provided. Extensive experiments with synthetic and real data show that, compared to previous techniques, our method accesses fewer objects, while being orders of magnitude faster.

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Efficient Aggregation of Ranked Inputs

Distributed RDF systems partition data across multiple computer nodes. Partitioning is typically based on heuristics that minimize inter-node communication and it is performed in an initial, data pre-processing phase. Therefore, the resulting partitions are static and do not adapt to changes in the query workload; as a result, existing systems are unable to consistently avoid communication for queries that are not favored by the initial data partitioning. Furthermore, for very large RDF knowledge bases, the partitioning phase becomes prohibitively expensive, leading to high startup costs.In this paper, we propose AdHash, a distributed RDF system which addresses the shortcomings of previous work. First, AdHash initially applies lightweight hash partitioning, which drastically minimizes the startup cost, while favoring the parallel processing of join patterns on subjects, without any data communication. Using a locality-aware planner, queries that cannot be processed in parallel are evaluated with minimal communication. Second, AdHash monitors the data access patterns and adapts dynamically to the query load by incrementally redistributing and replicating frequently accessed data. As a result, the communication cost for future queries is drastically reduced or even eliminated. Our experiments with synthetic and real data verify that AdHash (i) starts faster than all existing systems, (ii) processes thousands of queries before other systems become online, and (iii) gracefully adapts to the query load, being able to evaluate queries on billion-scale RDF data in sub-seconds. In this demonstration, audience can use a graphical interface of AdHash to verify its performance superiority compared to state-of-the-art distributed RDF systems.

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Nikos Mamoulis

Papers

Algorithms for quantified constraint satisfaction problems

Scalable Probabilistic Similarity Ranking in Uncertain Databases

An audit environment for outsourcing of frequent itemset mining

Efficient Aggregation of Ranked Inputs

Evaluating SPARQL queries on massive RDF datasets