Computational geometry

Managing and Mining Graph Data is a comprehensive survey book in graph data analytics. It contains extensive surveys on important graph topics such as graph languages, indexing, clustering, data generation, pattern mining, classification, keyword search, pattern matching, and privacy. It also studies a number of domain-specific scenarios such as stream mining, web graphs, social networks, chemical and biological data. The chapters are written by leading researchers, and provide a broad perspective of the area. This is the first comprehensive survey book in the emerging topic of graph data processing. Managing and Mining Graph Data is designed for a varied audience composed of professors, researchers and practitioners in industry. This volume is also suitable as a reference book for advanced-level database students in computer science. About the Editors:Charu C. Aggarwal obtained his B.Tech in Computer Science from IIT Kanpur in 1993 and Ph.D. from MIT in 1996. He has worked as a researcher at IBM since then, and has published over 130 papers in major data mining conferences and journals. He has applied for or been granted over 70 US and International patents, and has thrice been designated a Master Inventor at IBM. He has received an IBM Corporate award for his work on data stream analytics, and an IBM Outstanding Innovation Award for his work on privacy technology. He has served on the executive committees of most major data mining conferences. He has served as an associate editor of the IEEE TKDE, as an associate editor of the ACM SIGKDD Explorations, and as an action editor of the DMKD Journal. He is a fellow of the IEEE, and a life-member of the ACM. Haixun Wang is currently a researcher at Microsoft Research Asia. He received the B.S. and the M.S. degree, both in computer science, from Shanghai Jiao Tong University in 1994 and 1996. He received the Ph.D. degree in computer science from the University of California, Los Angeles in 2000. He subsequently worked as a researcher at IBMuntil 2009. His main research interest is database language and systems, data mining, and information retrieval. He has published more than 100 research papers in referred international journals and conference proceedings. He serves as an associate editor of the IEEE TKDE, and has served as a reviewer and program committee member of leading database conferences and journals.

/pdf/managing-and-mining-graph-data-5dk8n67r5e.pdf

Managing and Mining Graph Data

BLOCKIN BLOCKINÒ BLOCKIN× ½¸ÔÔº ¿ßß¿º ¿

ACM Transactions on Database Systems

The dramatic proliferation of sophisticated networks has resulted in a growing need for supporting effective querying and mining methods over such large-scale graph-structured data. At the core of many advanced network operations lies a common and critical graph query primitive: how to search graph structures efficiently within a large network? Unfortunately, the graph query is hard due to the NP-complete nature of subgraph isomorphism. It becomes even challenging when the network examined is large and diverse. In this paper, we present a high performance graph indexing mechanism, SPath, to address the graph query problem on large networks. SPath leverages decomposed shortest paths around vertex neighborhood as basic indexing units, which prove to be both effective in graph search space pruning and highly scalable in index construction and deployment. Via SPath, a graph query is processed and optimized beyond the traditional vertex-at-a-time fashion to a more efficient path-at-a-time way: the query is first decomposed to a set of shortest paths, among which a subset of candidates with good selectivity is picked by a query plan optimizer; Candidate paths are further joined together to help recover the query graph to finalize the graph query processing. We evaluate SPath with the state-of-the-art GraphQL on both real and synthetic data sets. Our experimental studies demonstrate the effectiveness and scalability of SPath, which proves to be a more practical and efficient indexing method in addressing graph queries on large networks.

/pdf/on-graph-query-optimization-in-large-networks-2e8t8ih6mm.pdf

On graph query optimization in large networks

Finding dense subgraphs is an important graph-mining task with many applications. Given that the direct optimization of edge density is not meaningful, as even a single edge achieves maximum density, research has focused on optimizing alternative density functions. A very popular among such functions is the average degree, whose maximization leads to the well-known densest-subgraph notion. Surprisingly enough, however, densest subgraphs are typically large graphs, with small edge density and large diameter. In this paper, we define a novel density function, which gives subgraphs of much higher quality than densest subgraphs: the graphs found by our method are compact, dense, and with smaller diameter. We show that the proposed function can be derived from a general framework, which includes other important density functions as subcases and for which we show interesting general theoretical properties. To optimize the proposed function we provide an additive approximation algorithm and a local-search heuristic. Both algorithms are very efficient and scale well to large graphs. We evaluate our algorithms on real and synthetic datasets, and we also devise several application studies as variants of our original problem. When compared with the method that finds the subgraph of the largest average degree, our algorithms return denser subgraphs with smaller diameter. Finally, we discuss new interesting research directions that our problem leaves open.

/pdf/denser-than-the-densest-subgraph-extracting-optimal-quasi-3of1nnlw56.pdf

Denser than the densest subgraph: extracting optimal quasi-cliques with quality guarantees

In this chapter, we present a survey of algorithms for dense subgraph discovery.The problem of dense subgraph discovery is closely related to clustering though the two problems also have a number of differences. For example, the problem of clustering is largely concerned with that of finding a fixed partition in the data, whereas the problem of dense subgraph discovery defines these dense components in a much more flexible way. The problem of dense subgraph discovery may wither be defined over single or multiple graphs. We explore both cases. In the latter case, the problem is also closely related to the problem of the frequent subgraph discovery. This chapter will discuss and organize the literature on this topic effectively in order to make it much more accessible to the reader.

/pdf/a-survey-of-algorithms-for-dense-subgraph-discovery-3gqishefdh.pdf

A Survey of Algorithms for Dense Subgraph Discovery

Reachability queries on large directed graphs have attracted much attention recently. The existing work either uses spanning structures, such as chains or trees, to compress the complete transitive closure, or utilizes the 2-hop strategy to describe the reachability. Almost all of these approaches work well for very sparse graphs. However, the challenging problem is that as the ratio of the number of edges to the number of vertices increases, the size of the compressed transitive closure grows very large. In this paper, we propose a new 3-hop indexing scheme for directed graphs with higher density. The basic idea of 3-hop indexing is to use chain structures in combination with hops to minimize the number of structures that must be indexed. Technically, our goal is to find a 3-hop scheme over dense DAGs (directed acyclic graphs) with minimum index size. We develop an efficient algorithm to discover a transitive closure contour, which yields near optimal index size. Empirical studies show that our 3-hop scheme has much smaller index size than state-of-the-art reachability query schemes such as 2-hop and path-tree when DAGs are not very sparse, while our query time is close to path-tree, which is considered to be one of the best reachability query schemes.

/pdf/3-hop-a-high-compression-indexing-scheme-for-reachability-23j3c6h5cp.pdf

3-HOP: a high-compression indexing scheme for reachability query

Efficiently processing queries against very large graphs is an important research topic largely driven by emerging real world applications, as diverse as XML databases, GIS, web mining, social network analysis, ontologies, and bioinformatics. In particular, graph reachability has attracted a lot of research attention as reachability queries are not only common on graph databases, but they also serve as fundamental operations for many other graph queries. The main idea behind answering reachability queries in graphs is to build indices based on reachability labels. Essentially, each vertex in the graph is assigned with certain labels such that the reachability between any two vertices can be determined by their labels. Several approaches have been proposed for building these reachability labels; among them are interval labeling (tree cover) and 2-hop labeling. However, due to the large number of vertices in many real world graphs (some graphs can easily contain millions of vertices), the computational cost and (index) size of the labels using existing methods would prove too expensive to be practical. In this paper, we introduce a novel graph structure, referred to as path-tree, to help labeling very large graphs. The path-tree cover is a spanning subgraph of G in a tree shape. We demonstrate both analytically and empirically the effectiveness of our new approaches.

http://www.cs.kent.edu/~jin/Papers/SIGMOD08.pdf

Efficiently answering reachability queries on very large directed graphs

Our world today is generating huge amounts of graph data such as social networks, biological networks, and the semantic web. Many of these real-world graphs are edge-labeled graphs, i.e., each edge has a label that denotes the relationship between the two vertices connected by the edge. A fundamental research problem on these labeled graphs is how to handle the label-constraint reachability query: Can vertex u reach vertex v through a path whose edge labels are constrained by a set of labels? In this work, we introduce a novel tree-based index framework which utilizes the directed maximal weighted spanning tree algorithm and sampling techniques to maximally compress the generalized transitive closure for the labeled graphs. An extensive experimental evaluation on both real and synthetic datasets demonstrates the efficiency of our approach in answering label-constraint reachability queries.

/pdf/computing-label-constraint-reachability-in-graph-databases-1lagvdnwq2.pdf

Computing label-constraint reachability in graph databases

The distance query, which asks the length of the shortest path from a vertex $u$ to another vertex v, has applications ranging from link analysis, semantic web and other ontology processing, to social network operations. Here, we propose a novel labeling scheme, referred to as Highway-Centric Labeling, for answering distance queries in a large sparse graph. It empowers the distance labeling with a highway structure and leverages a novel bipartite set cover framework/algorithm. Highway-centric labeling provides better labeling size than the state-of-the-art $2$-hop labeling, theoretically and empirically. It also offers both exact distance and approximate distance with bounded accuracy. A detailed experimental evaluation on both synthetic and real datasets demonstrates that highway-centric labeling can outperform the state-of-the-art distance computation approaches in terms of both index size and query time.

/pdf/a-highway-centric-labeling-approach-for-answering-distance-k52jp2jiur.pdf

Ning Ruan

Papers

A Survey of Algorithms for Dense Subgraph Discovery

3-HOP: a high-compression indexing scheme for reachability query

Efficiently answering reachability queries on very large directed graphs

Computing label-constraint reachability in graph databases

A highway-centric labeling approach for answering distance queries on large sparse graphs