N
Ning Zhang
Researcher at Stowers Institute for Medical Research
Publications - 29
Citations - 657
Ning Zhang is an academic researcher from Stowers Institute for Medical Research. The author has contributed to research in topics: RNA splicing & Gene. The author has an hindex of 11, co-authored 24 publications receiving 365 citations. Previous affiliations of Ning Zhang include University of Missouri & Memorial Sloan Kettering Cancer Center.
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Journal ArticleDOI
Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates.
Wei Wang,Wei Wang,Chi-Kuo Hu,An Zeng,Dana Alegre,Deqing Hu,Kirsten Gotting,Augusto Ortega Granillo,Yongfu Wang,Sofia M. C. Robb,Robert Schnittker,Shasha Zhang,Dillon Alegre,Hua Li,Eric D. Ross,Eric D. Ross,Ning Zhang,Anne Brunet,Alejandro Sánchez Alvarado,Alejandro Sánchez Alvarado +19 more
TL;DR: Two large differences in the genomic responses to amputation in killifish and zebrafish are uncovered and an evolutionarily conserved teleost regeneration response program (RRP), which is mainly deployed by regeneration-specific blastema cells is uncovered.
Journal ArticleDOI
P3DB 3.0: From plant phosphorylation sites to protein networks
Qiuming Yao,Huangyi Ge,Shangquan Wu,Ning Zhang,Wei Chen,Chunhui Xu,Jianjiong Gao,Jay J. Thelen,Dong Xu +8 more
TL;DR: The new P3DB reflects a community-based design through which users can share datasets and automate data depository processes for publication purposes, and incorporates multiple network viewers for the above features, such as PPI network, kinase-substrate network, phosphatase- substrate network and domain co-occurrence network to help study phosphorylation from a systems point of view.
Journal ArticleDOI
Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs
Shakhawat Hossain,Taiji Kawakatsu,Taiji Kawakatsu,Kyung Do Kim,Ning Zhang,Cuong T. Nguyen,Saad M. Khan,Josef M. Batek,Trupti Joshi,Jeremy Schmutz,Jane Grimwood,Robert J. Schmitz,Dong Xu,Scott A. Jackson,Joseph R. Ecker,Gary Stacey +15 more
TL;DR: The data indicate that changes in DNA methylation are directly or indirectly associated with expression of genes and transposons within the context of either specific tissues/cells or stress (heat).
Journal ArticleDOI
Translation of small downstream ORFs enhances translation of canonical main open reading frames.
Qiushuang Wu,Matthew Wright,Madelaine Gogol,William D. Bradford,Ning Zhang,Ariel A. Bazzini,Ariel A. Bazzini +6 more
TL;DR: It is proposed that dORFs represent a new, strong, and universal translation regulatory mechanism in vertebrates and that translation of d ORFs enhances translation of their corresponding canonical ORFs.
Journal ArticleDOI
Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles.
Oswaldo Valdés-López,Oswaldo Valdés-López,Josef M. Batek,Nicolás Gómez-Hernández,Cuong T. Nguyen,Mariel C Isidra-Arellano,Ning Zhang,Trupti Joshi,Dong Xu,Kim K. Hixson,Karl K. Weitz,Joshua T. Aldrich,Ljiljana Paša-Tolić,Gary Stacey +13 more
TL;DR: In this paper, the authors performed genome-wide transcriptomic and proteomic analyses on isolated root hairs, which are a single, epidermal cell type, and compared their response to stripped roots.