P
Paul van der Mark
Researcher at Florida State University
Publications - 6
Citations - 19676
Paul van der Mark is an academic researcher from Florida State University. The author has contributed to research in topics: Markov chain Monte Carlo & Markov chain. The author has an hindex of 6, co-authored 6 publications receiving 15642 citations.
Papers
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Journal ArticleDOI
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice across a Large Model Space
Fredrik Ronquist,Maxim Teslenko,Paul van der Mark,Daniel L. Ayres,Aaron E. Darling,Sebastian Höhna,Bret Larget,Liang Liu,Marc A. Suchard,John P. Huelsenbeck +9 more
TL;DR: The new version provides convergence diagnostics and allows multiple analyses to be run in parallel with convergence progress monitored on the fly, and provides more output options than previously, including samples of ancestral states, site rates, site dN/dS rations, branch rates, and node dates.
and Model Choice Across a Large Model Space
Fredrik Ronquist,Maxim Teslenko,Paul van der Mark,Aaron E. Darling,Sebastian H,Bret Larget,Liang Liu,Marc A. Suchard,John P. Huelsenbeck +8 more
TL;DR: MrBayes 3.2 as discussed by the authors is a software package for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods, which has been widely used in the literature.
Journal ArticleDOI
Inferring dispersal: a Bayesian approach to phylogeny‐based island biogeography, with special reference to the Canary Islands
TL;DR: In this paper, a new Bayesian approach to island biogeography that estimates island carrying capacities and dispersal rates based on simple Markov models of biogeographical processes is described.
Journal ArticleDOI
Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics.
TL;DR: It is found that proposals producing topology changes as a side effect of branch length changes (LOCAL and Continuous Change) consistently perform worse than those involving stochastic branch rearrangements (nearest neighbor interchange, subtree pruning and regrafting, tree bisection and reconnection, or subtree swapping).
Book ChapterDOI
The Phylogenetic Handbook: Bayesian phylogenetic analysis using MRBAYES
TL;DR: It is shown that Sweden is one of only a small number of teams that compete successfully for the medals and is likely to be in the vicinity of these estimates.