Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

The Theory of Island Biogeography

Biofilms--matrix-enclosed microbial accretions that adhere to biological or non-biological surfaces--represent a significant and incompletely understood mode of growth for bacteria. Biofilm formation appears early in the fossil record (approximately 3.25 billion years ago) and is common throughout a diverse range of organisms in both the Archaea and Bacteria lineages, including the 'living fossils' in the most deeply dividing branches of the phylogenetic tree. It is evident that biofilm formation is an ancient and integral component of the prokaryotic life cycle, and is a key factor for survival in diverse environments. Recent advances show that biofilms are structurally complex, dynamic systems with attributes of both primordial multicellular organisms and multifaceted ecosystems. Biofilm formation represents a protected mode of growth that allows cells to survive in hostile environments and also disperse to colonize new niches. The implications of these survival and propagative mechanisms in the context of both the natural environment and infectious diseases are discussed in this review.

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Bacterial biofilms: from the natural environment to infectious diseases.

The Intergovernmental Panel on Climate Change (IPCC) Technical Paper Climate Change and Water draws together and evaluates the information in IPCC Assessment and Special Reports concerning the impacts of climate change on hydrological processes and regimes, and on freshwater resources – their availability, quality, use and management. It takes into account current and projected regional key vulnerabilities, prospects for adaptation, and the relationships between climate change mitigation and water. Its objectives are:

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Climate change and water.

This book is written as a reference on organic substances in natural waters and as a supplementary text for graduate students in water chemistry. The chapters address five topics: amount, origin, nature, geochemistry, and characterization of organic carbon. Of these topics, the main themes are the amount and nature of dissolved organic carbon in natural waters (mainly fresh water, although seawater is briefly discussed). It is hoped that the reader is familiar with organic chemistry, but it is not necessary. The first part of the book is a general overview of the amount and general nature of dissolved organic carbon. Over the past 10 years there has been an exponential increase in knowledge on organic substances in water, which is the result of money directed toward the research of organic compounds, of new methods of analysis (such as gas chromatography and mass spectrometry), and most importantly, the result of more people working in this field. Because of this exponential increase in knowledge, there is a need to pull together and summarize the data that has accumulated from many disciplines over the last decade.

Organic geochemistry of natural waters

We explore the role of lakes in carbon cycling and global climate, examine the mechanisms influencing carbon pools and transformations in lakes, and discuss how the metabolism of carbon in the inland waters is likely to change in response to climate. Furthermore, we project changes as global climate change in the abundance and spatial distribution of lakes in the biosphere, and we revise the estimate for the global extent of carbon transformation in inland waters. This synthesis demonstrates that the global annual emissions of carbon dioxide from inland waters to the atmosphere are similar in magnitude to the carbon dioxide uptake by the oceans and that the global burial of organic carbon in inland water sediments exceeds organic carbon sequestration on the ocean floor. The role of inland waters in global carbon cycling and climate forcing may be changed by human activities, including construction of impoundments, which accumulate large amounts of carbon in sediments and emit large amounts of methane to the atmosphere. Methane emissions are also expected from lakes on melting permafrost. The synthesis presented here indicates that (1) inland waters constitute a significant component of the global carbon cycle, (2) their contribution to this cycle has significantly changed as a result of human activities, and (3) they will continue to change in response to future climate change causing decreased as well as increased abundance of lakes as well as increases in the number of aquatic impoundments.

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Lakes and reservoirs as regulators of carbon cycling and climate

Whole leachate and humic and fulvic acid fractions of dissolved organic matter (DOM) released from senescent littoral aquatic plants were exposed to varying spectra of ultraviolet radiation as well as natural UV of sunlight over different periods of time. Examination of the DOM by solid-state 13C nuclear magnetic resonance and pyrolytic gas chromatography-mass spectrometry before and after photolysis revealed only subtle changes to the bulk DOM. However, the DOM exposed to natural UV radiation showed immediate stimulation of and sustained bacterial growth. Chemical analyses by high performance liquid chromatography (HPLC) of the small organic fractions generated by photolysis of humic substances showed marked, pro- ’ gressively increasing release of numerous small fatty acids, particularly acetic, formic, citric, pyruvic, and levulinic, among others. Use of radiolabeled humic substances demonstrated that these small compounds photolyzed from the humic substances were readily metabolized by the bacteria.

https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1995.40.8.1369

Natural photolysis by ultraviolet irradiance of recalcitrant dissolved organic matter to simple substrates for rapidbacterial metabolism

The emergent wetland and littoral components of the land-water zone are functionally coupled by the amounts and types of dissolved organic matter that are released, processed, transported to, and then further processed within the recipient waters. Operational couplings and integrations in freshwater ecosystems occur along physical and metabolic gradients of a number of scales from micrometer to kilometer dimensions. The operation and turnover of the microbial communities, largely associated with surfaces, generate the metabolic foundations for material fluxes along larger-scale gradients.

Gradient-dominated ecosystems: sources and regulatory functions of dissolved organic matter in freshwater ecosystems

High concentrations (20-75 pmol cm-3) of amorphous Fe(III) oxide were observed in unvegetated surface and Juncus eflusus rhizosphere sediments of a freshwater wetland in the southeastern United States. Incubation experiments demonstrated that microbial Fe(III) oxide reduction suppressed sulfate reduction and methanogenesis in surface scdimcnts and mediated 240% of depth-integrated (O-10 cm) unvegetated sediment carbon metabolism, compared to I 10% for sulfate reduction. In situ CO2 and CH, flux measurements verified that nonmethanogenic pathways accounted for - 50% of unvegetated sediment carbon metabolism. Lower (- 1 O-fold) rates of dark/anaerobic CH, flux from experimental vegetated cores relative to unvegetated controls suggested that methanogenesis was inhibited in the Juncus rhizosphere, in which active Fe(III) oxide reduction was indicated by the presence of low but readily detectable levels of dissolved and solid-phase Fe(II). Fe(III) oxide reduction accounted for 65% of total carbon metabolism in rhizosphere sediment incubations, compared to 22% for methanogenesis. In contrast, methanogenesis dominated carbon metabolism (72% of total) in experimental unvegetatcd sediment cores. The high Fe(III) oxide concentrations and reduction rates observed in unvegetated surface and Juncus rhizosphere sediments were perpetuated by rapid Fe(III) regeneration via oxidation of Fe(II) compounds coupled to 0, input from the overlying water and plant roots, respectively. The results indicate that Fe(III) oxide reduction could mediate a considerable amount of organic carbon oxidation and significantly suppress CH, production in freshwater wetlands situated within globally extensive iron-rich tropical and subtropical soil regimes.

https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1996.41.8.1733

Organic carbon oxidation and suppression of methane production by microbial Fe(III) oxide reduction in vegetated and unvegetated freshwater wetland sediments

SUMMARY
1. Pelagic trophic structure and energy fluxes are evaluated predominantly on the basis of ingestion of particulate organic matter by living organisms and the effects of consumption on the population dynamics of trophic levels.

2. Population fluxes are not representative of the material and energy fluxes of either the composite pelagic region or the lake ecosystem. Metabolism of particulate and especially dissolved organic detritus from many pelagic and non-pelagic autochthonous and from allochthonous sources dominates both material and energy fluxes. Because of the very large magnitudes and relative chemical recalcitrance of these detrital sources, the large but slow metabolism of detritus provides an inherent ecosystem stability that energetically dampens the ephemeral, volatile fluctuations of higher trophic levels.

3. The annual time period is the only meaningful interval in comparative quantitative analyses of material and energy fluxes at population, community, and ecosystem levels.

4. Non-predatory death and metabolism by prokaryotic and protistian heterotrophs dominate. Continued application of animal-orientated relationships to the integrated, process-driven couplings of the aquatic ecosystems impedes understanding of quantitative ecosystem pathways and control mechanisms.

Death, detritus, and energy flow in aquatic ecosystems

Potential sources of dissolved P to phytoplankton and bacterioplankton were examined in a small meso-eutrophic lake. Kinetic analyses of whole lake water on three dates demonstrated that the maximal rate (V,,,,,) for phosphate uptake was highest (5.2 nM min- ‘) in spring. On all dates, size fractionation of plankton and kinetic analyses of uptake indicated that most (> 50%) uptake of phosphate was by phytoplankton at VmaX and by bacteria at ambient concentrations. Isotope dilution assays, with either unlabeled phosphate or various dissolved organic P (DOP) compounds, demonstrated that phosphate was the preferred substrate for uptake into both algae and bacteria. Phytoplankton had greater capacity for uptake of P from both phosphate and DOP than bacterioplankton. We concluded that phytoplankton use both phosphate and DOP, particularly at high substrate concentrations, and that bacterial utilization of P may be limited by the availability of organic C or other nutrients.

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Robert G. Wetzel

Papers

Natural photolysis by ultraviolet irradiance of recalcitrant dissolved organic matter to simple substrates for rapidbacterial metabolism

Gradient-dominated ecosystems: sources and regulatory functions of dissolved organic matter in freshwater ecosystems

Organic carbon oxidation and suppression of methane production by microbial Fe(III) oxide reduction in vegetated and unvegetated freshwater wetland sediments

Death, detritus, and energy flow in aquatic ecosystems

Uptake of dissolved inorganic and organic bphosphorus compounds by phytoplankton and bacterioplankton