Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

So far in this course we have dealt entirely with the evolution of characters that are controlled by simple Mendelian inheritance at a single locus. There are notes on the course website about gametic disequilibrium and how allele frequencies change at two loci simultaneously, but we didn’t discuss them. In every example we’ve considered we’ve imagined that we could understand something about evolution by examining the evolution of a single gene. That’s the domain of classical population genetics. For the next few weeks we’re going to be exploring a field that’s actually older than classical population genetics, although the approach we’ll be taking to it involves the use of population genetic machinery. If you know a little about the history of evolutionary biology, you may know that after the rediscovery of Mendel’s work in 1900 there was a heated debate between the “biometricians” (e.g., Galton and Pearson) and the “Mendelians” (e.g., de Vries, Correns, Bateson, and Morgan). Biometricians asserted that the really important variation in evolution didn’t follow Mendelian rules. Height, weight, skin color, and similar traits seemed to

Human biochemical genetics

Genetics and analysis of quantitative traits

Whether inbreeding affects the demography and persistence of natural populations has been questioned. However, new pedigree data from field populations and molecular and analytical tools for tracing patterns of relationship and inbreeding have now enhanced our ability to detect inbreeding depression within and among wild populations. This work reveals that levels of inbreeding depression vary across taxa, populations and environments, but are usually substantial enough to affect both individual and population performance. Data from bird and mammal populations suggest that inbreeding depression often significantly affects birth weight, survival, reproduction and resistance to disease, predation and environmental stress. Plant studies, based mostly on comparing populations that differ in size or levels of genetic variation, also reveal significant inbreeding effects on seed set, germination, survival and resistance to stress. Data from butterflies, birds and plants demonstrate that populations with reduced genetic diversity often experience reduced growth and increased extinction rates. Crosses between such populations often result in heterosis. Such a genetic rescue effect might reflect the masking of fixed deleterious mutations. Thus, it might be necessary to retain gene flow among increasingly fragmented habitat patches to sustain populations that are sensitive to inbreeding.

Inbreeding effects in wild populations.

Although the potential genetic risks associated with rare or endangered plants and small populations have been discussed previously, the practical role of population genetics in plant conservation remains unclear. Using theory and the available data, we examine the effects of genetic drift, inbreeding, and gene flow on genetic diversity and fitness in rare plants and small populations. We identify those circumstances that are likely to put these plant species and populations at genetic risk. Warning signs that populations may be vulnerable include changes in factors such as population size, degree of isolation, and fitness. When possible, we suggest potential management strategies.

/pdf/population-genetic-consequences-of-small-population-size-3onkvtfxng.pdf

POPULATION GENETIC CONSEQUENCES OF SMALL POPULATION SIZE: Implications for Plant Conservation

Extreme environments and adaptation.- The evolution of plants in metal-contaminated environments.- Responses of aquatic organisms to pollutant stress: Theoretical and practical implications.- Conifers from the cold.- Genetic variation and environmental stress.- Phenotypic plasticity and fluctuating asymmetry as responses to environmental stress in the butterflyBicyclus anynana.- Environmental stress and the expression of genetic variation.- Worldwide latitudinal clines for the alcohol dehydrogenase polymorphism in Drosophila melanogaster: What is the unit of selection?.- Stress and metabolic regulation inDrosophila.- Acclimation and response to thermal stress.- Phenotypic and evolutionary adaptation of a model bacterial system to stressful thermal environments.- Ecological and evolutionary physiology of heat shock proteins and the stress response inDrosophila: Complementary insights from genetic engineering and natural variation.- High-temperature stress and the evolution of thermal resistance inDrosophila.- Stress, selection and extinction.- Genetic and environmental stress, and the persistence of populations.- Adaptation and extinction in changing environments.- Environmental stress and evolution: A theoretical study.- Stress, developmental stability and sexual selection.- Evolution and stress.- Genetic variability and adaptation to stress.- Stress-resistance genotypes, metabolic efficiency and interpreting evolutionary change.- The Plus ca change model: Explaining stasis and evolution in response to abiotic stress over geological timescales.

/pdf/environmental-stress-adaptation-and-evolution-an-overview-53i2gihmn7.pdf

Environmental stress, adaptation and evolution: an overview

http://www.mus-nh.city.osaka.jp/yokogawa/document/20101214TRG.pdf

Conservation genetics in transition to conservation genomics

An important issue in the study of the evolution of aging in Drosophila melanogaster is whether decreased early fecundity is inextricably coupled with increased life span in selection experiments on age at reproduction. Here, this problem has been tackled using an experimental design in which selection is applied directly to longevity. Selection appeared successful for short and long life, in females as well as males. Progeny production of females selected for long life was lower than for short-lived females throughout their whole life. No increase of late-life reproduction in long-lived females occurred, as has been found in selection experiments on age at reproduction. This discrepancy is explained in terms of the inadequacy of the latter design to separate selection on life span from selection on late-life fecundity. Moreover, starvation resistance and fat content were lower for adults selected for short life. In general, the data support the negative-pleiotropy-disposable-soma theory of aging, and it is hypothesized that the pleiotropic allocation of resources to maintenance versus to reproduction as implicated in the theory might involve lipid metabolism. It is argued that further research on this suggestion is urgent and should certainly comprise observations on male reproduction because these are for the greater part still lacking. In conclusion, the longevity of D. melanogaster can be genetically altered in a direct-selection design, and such an increase is accompanied by a decreased general reproduction and thus early reproduction.

https://www.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1558-5646.1995.tb02301.x

Direct selection on life-span in drosophila-melanogaster

A fundamental assumption underlying the importance of genetic risks within conservation biology is that inbreeding increases the extinction probability of populations. Although inbreeding has been shown to have a detrimental impact on individual fitness, its contribution to extinction is still poorly understood. We have studied the consequences of different levels of prior inbreeding for the persistence of small populations using Drosophila melanogaster as a model organism. To this end, we determined the extinction rate of small vial populations differing in the level of inbreeding under both optimal and stress conditions, i.e. high temperature stress and ethanol stress. We show that inbred populations have a significantly higher short-term probability of extinction than non-inbred populations, even for low levels of inbreeding, and that the extinction probability increases with increasing inbreeding levels. In addition, we observed that the effects of inbreeding become greatly enhanced under stressful environmental conditions. More importantly, our results show that the impact of environmental stress becomes significantly greater for higher inbreeding levels, demonstrating explicitly that inbreeding and environmental stress are not independent but can act synergistically. These effects seem long lasting as the impact of prior inbreeding was still qualitatively the same after the inbred populations had been expanded to appreciable numbers and maintained as such for approximately 50 generations. Our observations have significant consequences for conservation biology.

https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1420-9101.2000.00177.x

Does inbreeding affect the extinction risk of small populations?: predictions from Drosophila

Elimination or reduction of inbreeding depression by natural selection at the contributing loci (purging) has been hypothesized to effectively mitigate the negative effects of inbreeding in small isolated populations. This may, however, only be valid when the environmental conditions are relatively constant. We tested this assumption using Drosophila melanogaster as a model organism. By means of chromosome balancers, chromosomes were sampled from a wild population and their viability was estimated in both homozygous and heterozygous conditions in a favourable environment. Around 50% of the chromosomes were found to carry a lethal or sublethal mutation, which upon inbreeding would cause a considerable amount of inbreeding depression. These detrimentals were artificially purged by selecting only chromosomes that in homozygous condition had a viability comparable to that of the heterozygotes (quasi-normals), thereby removing most deleterious recessive alleles. Next, these quasi-normals were tested both for egg-to-adult viability and for total fitness under different environmental stress conditions: high-temperature stress, DDT stress, ethanol stress, and crowding. Under these altered stressful conditions, particularly for high temperature and DDT, novel recessive deleterious effects were expressed that were not apparent under control conditions. Some of these chromosomes were even found to carry lethal or near-lethal mutations under stress. Compared with heterozygotes, homozygotes showed on average 25% additional reduction in total fitness. Our results show that, except for mutations that affect fitness under all environmental conditions, inbreeding depression may be due to different loci in different environments. Hence purging of deleterious recessive alleles can be effective only for the particular environment in which the purging occurred, because additional load will become expressed under changing environmental conditions. These results not only indicate that inbreeding depression is environment dependent, but also that inbreeding depression may become more severe under changing stressful conditions. These observations have significant consequences for conservation biology.

https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1420-9101.1999.00113.x

Rudolf Bijlsma

Papers

Environmental stress, adaptation and evolution: an overview

Conservation genetics in transition to conservation genomics

Direct selection on life-span in drosophila-melanogaster

Does inbreeding affect the extinction risk of small populations?: predictions from Drosophila

Environmental dependence of inbreeding depression and purging in Drosophila melanogaster