Introduction.- Data management and software.- Advice for teachers.- Exploration.- Linear regression.- Generalised linear modelling.- Additive and generalised additive modelling.- Introduction to mixed modelling.- Univariate tree models.- Measures of association.- Ordination--first encounter.- Principal component analysis and redundancy analysis.- Correspondence analysis and canonical correspondence analysis.- Introduction to discriminant analysis.- Principal coordinate analysis and non-metric multidimensional scaling.- Time series analysis--Introduction.- Common trends and sudden changes.- Analysis and modelling lattice data.- Spatially continuous data analysis and modelling.- Univariate methods to analyse abundance of decapod larvae.- Analysing presence and absence data for flatfish distribution in the Tagus estuary, Portugual.- Crop pollination by honeybees in an Argentinean pampas system using additive mixed modelling.- Investigating the effects of rice farming on aquatic birds with mixed modelling.- Classification trees and radar detection of birds for North Sea wind farms.- Fish stock identification through neural network analysis of parasite fauna.- Monitoring for change: using generalised least squares, nonmetric multidimensional scaling, and the Mantel test on western Montana grasslands.- Univariate and multivariate analysis applied on a Dutch sandy beach community.- Multivariate analyses of South-American zoobenthic species--spoilt for choice.- Principal component analysis applied to harbour porpoise fatty acid data.- Multivariate analysis of morphometric turtle data--size and shape.- Redundancy analysis and additive modelling applied on savanna tree data.- Canonical correspondence analysis of lowland pasture vegetation in the humid tropics of Mexico.- Estimating common trends in Portuguese fisheries landings.- Common trends in demersal communities on the Newfoundland-Labrador Shelf.- Sea level change and salt marshes in the Wadden Sea: a time series analysis.- Time series analysis of Hawaiian waterbirds.- Spatial modelling of forest community features in the Volzhsko-Kamsky reserve.

Analysing Ecological Data

The usefulness and relevance of size-based indicators (SBIs) to an ecosystem approach to fisheries (EAF) are assessed through a review of empirical and modelling studies. SBIs are tabulated along with their definitions, data requirements, potential biases, availability of time-series, and expected directions of change in response to fishing pressure. They include mean length in a population, mean length in a community, mean maximum length in a community, and the slope and intercept of size spectra. Most SBIs can be derived from fairly standard survey data on length frequencies, without the need for elaborate models. Possible fishing- and environment-induced effects are analysed to distinguish between the two causes, and hypothetical cases of reference directions of change are tabulated. We conclude that no single SBI can serve as an effective overall indicator of heavy fishing pressure. Rather, suites of SBI should be selected, and reference directions may be more useful than reference points. Further modelling and worldwide comparative studies are needed to provide better understanding of SBIs and the factors affecting them. The slow response to fishing pressure reflects the complexity of community interactions and ecosystem responses, and prohibits their application in the context of short-term (annual) tactical fisheries management. However, movement towards longer-term (5-10 years) strategic management in EAF should facilitate their use.

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Using size-based indicators to evaluate the ecosystem effects of fishing

Population and community descriptors that might be used as indicators of the impact of fishing are reviewed. The criteria used for the evaluation of these indicators are meaning, expected effect of...

Which community indicators can measure the impact of fishing? A review and proposals

How does fishing alter marine populations and ecosystems sensitivity to climate

Scaling relationships (where body size features as the independent variable) and power-law distributions are commonly reported in ecological systems. In this review we analyze scaling relationships related to energy acquisition and transformation and power-laws related to fluctuations in numbers. Our aim is to show how individual level attributes can help to explain and predict patterns at the level of populations that can propagate at upper levels of organization. We review similar relationships also appearing in the analysis of aquatic ecosystems (i.e. the biomass spectra) in the context of ecological invariant relationships (i.e. independent of size) such as the 'energetic equivalence rule' and the 'linear biomass hypothesis'. We also discuss some power-law distributions emerging in the analysis of numbers and fluctuations in ecological attributes as they point to regularities that are yet to be integrated with traditional scaling relationships and which we foresee as an exciting area of future research.

Scaling and power-laws in ecological systems.

By analysing data sets from different world regions we add evidence to documented
changes in demersal fish community structure that may be related to fishing. Changes
are analysed by community properties that might be expected to capture relevant
overall changes – size spectra slopes and intercepts, Shannon-Wiener diversity, and
dominance. Cross-system differences in the shape of the integrated community size
spectra appear to be related to ecosystem productivity. The slope of size spectra
appears to respond in a consistent way to changes in exploitation levels. In most areas
studied, but particularly in high-latitude regions, we observe a decreasing trend in the
slope, reflecting changes in size composition toward a relative decline in larger fish. The
results from tropical regions are less conclusive, partly owing to the difficulty in
obtaining consistent data series, but probably also because the generally higher growth
rates of the constituent species make the slope less sensitive to changes in fishing. No
evidence was found of any decline in species richness, while changes in diversity
(richness and evenness) were caused either by changes in patterns of dominance or by
changes in the number of species identified resulting from improved survey protocols.

Impact of fishing on size composition and diversity of demersal fish communities

The trophic role of snappers was evaluated on the continental shelves of the south-western Gulf of Mexico and the Yucatan in the south-eastern Gulf of Mexico. Mass-balanced, steady-state trophic models of the two ecosystems were constructed with Ecopath and perturbations were simulated in the ecosystems with Ecosim by increasing fishing mortality. Impacts were measured by changes in biomass of snappers and other groups, and in some indices of stability: persistence, recovery time and resilience. The snapper populations differed between ecosystems. The western Gulf of Mexico system appeared more complex and more stable than the Continental Shelf of Yucatan. Although overall stability indices between ecosystem suggested a similar structure and function, there were clear differences at a group level. Correlation of stability attributes between groups suggested differences in the role of snappers between the ecosystems suggesting that each stock should be managed individually.

S. Manickchand-Heileman

Papers

Impact of fishing on size composition and diversity of demersal fish communities

The trophic role of lutjanid fish and impacts of their fisheries in two ecosystems in the Gulf of Mexico