S
Satoshi Natsume
Researcher at Anglo Irish Bank
Publications - 33
Citations - 3459
Satoshi Natsume is an academic researcher from Anglo Irish Bank. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 15, co-authored 31 publications receiving 2419 citations. Previous affiliations of Satoshi Natsume include Iwate University.
Papers
More filters
Journal ArticleDOI
Genome sequencing reveals agronomically important loci in rice using MutMap
Akira Abe,Shunichi Kosugi,Kentaro Yoshida,Satoshi Natsume,Hiroki Takagi,Hiroyuki Kanzaki,Hideo Matsumura,Kakoto Yoshida,Chikako Mitsuoka,Muluneh Tamiru,Hideki Innan,Liliana M. Cano,Sophien Kamoun,Ryohei Terauchi +13 more
TL;DR: Results show that MutMap can accelerate the genetic improvement of rice and other crop plants and identify the unique genomic positions most probable to harbor mutations causing pale green leaves and semidwarfism, an agronomically relevant trait.
Journal ArticleDOI
QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.
Hiroki Takagi,Akira Abe,Kentaro Yoshida,Shunichi Kosugi,Satoshi Natsume,Chikako Mitsuoka,Aiko Uemura,Hiroe Utsushi,Muluneh Tamiru,Shohei Takuno,Hideki Innan,Liliana M. Cano,Sophien Kamoun,Ryohei Terauchi +13 more
TL;DR: Simulation study showed that QTL-seq is able to detect QTLs over wide ranges of experimental variables, and the method can be generally applied in population genomics studies to rapidly identify genomic regions that underwent artificial or natural selective sweeps.
Journal ArticleDOI
MutMap accelerates breeding of a salt-tolerant rice cultivar
Hiroki Takagi,Muluneh Tamiru,Akira Abe,Kentaro Yoshida,Aiko Uemura,Hiroki Yaegashi,Tsutomu Obara,Kaori Oikawa,Hiroe Utsushi,Eiko Kanzaki,Chikako Mitsuoka,Satoshi Natsume,Shunichi Kosugi,Hiroyuki Kanzaki,Hideo Matsumura,Naoya Urasaki,Sophien Kamoun,Ryohei Terauchi +17 more
TL;DR: The hst1 mutant was used to breed a salt-tolerant variety named ‘Kaijin’, which differs from Hitomebore by only 201 singlenucleotide polymorphisms (SNPs) and production of this salt-Tolerant mutant line ready for delivery to farmers took only two years using the approach.
Journal ArticleDOI
MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice
Rym Fekih,Hiroki Takagi,Muluneh Tamiru,Akira Abe,Satoshi Natsume,Hiroki Yaegashi,Shailendra Sharma,Shiveta Sharma,Hiroyuki Kanzaki,Hideo Matsumura,Hiromasa Saitoh,Chikako Mitsuoka,Hiroe Utsushi,Aiko Uemura,Eiko Kanzaki,Shunichi Kosugi,Kentaro Yoshida,Liliana M. Cano,Sophien Kamoun,Ryohei Terauchi +19 more
TL;DR: A versatile extension of MutMap, that identifies causal mutations by comparing SNP frequencies of bulked DNA of mutant and wild-type progeny of M3 generation derived from selfing of an M2 heterozygous individual, that is potentially useful for gene isolation in crops that are recalcitrant to artificial crosses.
Journal ArticleDOI
MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii
Hiroki Takagi,Aiko Uemura,Hiroki Yaegashi,Muluneh Tamiru,Akira Abe,Chikako Mitsuoka,Hiroe Utsushi,Satoshi Natsume,Hiroyuki Kanzaki,Hideo Matsumura,Hiromasa Saitoh,Kentaro Yoshida,Liliana M. Cano,Sophien Kamoun,Ryohei Terauchi +14 more
TL;DR: The MutMap-Gap method, which involves delineating a candidate region harboring a mutation of interest using the recently reported MutMap method, followed by de novo assembly, alignment, and identification of the mutation within genome gaps, should prove useful for cloning genes that exhibit significant structural variations.