S
Siobain Duffy
Researcher at Rutgers University
Publications - 85
Citations - 5664
Siobain Duffy is an academic researcher from Rutgers University. The author has contributed to research in topics: Begomovirus & Genome. The author has an hindex of 31, co-authored 78 publications receiving 4853 citations. Previous affiliations of Siobain Duffy include Pennsylvania State University & Yale University.
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Journal ArticleDOI
Strand-Specific Patterns of Codon Usage Bias Across Cressdnaviricota
TL;DR: The results suggest that the relative codon overrepresentation test can serve as a tool to help corroborate the genome organization of unclassified CRESS DNA viruses.
Journal ArticleDOI
Complete Genome Sequences of Five Phietaviruses Infecting Staphylococcus aureus
TL;DR: The annotated whole-genome sequences of five cultured phietaviruses infecting Staphylococcus aureus are presented and are closely related to prophages that were previously sequenced as part of S. aUREus genomes.
Posted ContentDOI
Population diversity of cassava mosaic begomoviruses increases over the course of serial vegetative propagation
C. D. Aimone,Erik Lavington,J. S. Hoyer,David O. Deppong,Leigh Mickelson-Young,Alana L. Jacobson,George G. Kennedy,Ignazio Carbone,Linda Hanley-Bowdoin,Siobain Duffy +9 more
TL;DR: In this paper, the authors used high-throughput sequencing to characterize the accumulation of nucleotide diversity after inoculation of infectious clones corresponding to African cassava mosaic virus (ACMV) and East African Cassava mosaic Cameroon virus (EACMCV) in the susceptible cassava landrace Kibandameno.
Journal ArticleDOI
Cassava begomovirus species diversity changes during plant vegetative cycles
Anna E. Dye,Brenda Muga,Jenniffer Mwangi,J. Steen Hoyer,Vanessa Ly,William C. Sharpee,B. Mware,M. Wambugu,Paul Labadie,David O. Deppong,Louis E. N. Jackai,Alana L. Jacobson,George G. Kennedy,Elijah Ateka,Siobain Duffy,Linda Hanley-Bowdoin,Ignazio Carbone,J. Trinidad Ascencio-Ibañez +17 more
TL;DR: In this article , the dynamics of different cassava mosaic begomovirus (CMB) species through time is analyzed in a greenhouse setting and the results suggest that whitefly transmission and vegetative transmission lead to different outcomes for ACMV and EACMV-like viruses.
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A Transducing Bacteriophage Infecting Staphylococcus epidermidis Contributes to the Expansion of a Novel Siphovirus Genus and Implies the Genus Is Inappropriate for Phage Therapy
TL;DR: The genome of an S. epidermidis–infecting phage SEP1 is reported and its genome is compared with five other sequenced phages with high sequence identity to conclude thatSEP1 may be temperate and members of this novel genus are not suitable for phage therapy.