Showing papers by "Steven D. Shackelford published in 2013"

Cross-sectional Study Examining Salmonella enterica Carriage in Subiliac Lymph Nodes of Cull and Feedlot Cattle at Harvest

Abstract: Bovine peripheral lymph nodes (LNs), including subiliac LNs, have been identified as a potential source of human exposure to Salmonella enterica, when adipose trim containing these nodes is incorporated into ground beef. In order to gain a better understanding of the burden of S. enterica in peripheral LNs of feedlot and cull cattle, a cross-sectional study was undertaken in which 3327 subiliac LNs were collected from cattle at harvest in seven plants, located in three geographically distinct regions of the United States. Samples were collected in three seasons: Fall 2010, Winter/Spring 2011, and Summer/Fall 2011. A convenience sample of 76 LNs per day, 2 days per season (approximately 1 month apart), was collected per plant, from carcasses held in the cooler for no less than 24 h. Every 10th carcass half on a rail was sampled, in an attempt to avoid oversampling any single cohort of cattle. Median point estimates of S. enterica contamination were generally low (1.3%); however, median Salmonella ...

Genome-wide association of meat quality traits and tenderness in swine.

Abstract: Pork quality has a large impact on consumer preference and perception of eating quality. A genome-wide association was performed for pork quality traits [intramuscular fat (IMF)], slice shear force (SSF), color attributes, purge, cooking loss, and pH] from 531 to 1,237 records on barrows and gilts of a Landrace-Duroc-Yorkshire population using the Illumina PorcineSNP60 BeadChip. Associations were detected using MTDFREML for all traits. Intramuscular fat had the greatest number of SNP associations, followed by pH, purge, cooking loss, shear force, and color. Two regions contained associations for multiple traits; one on SSC1 at 255 Mb near calcineurin subunit B (PPP3R2) was associated with SSF, moisture loss, and pH, and one on SSC6 from 28 to 29.5 Mb for purge and IMF containing the candidate genes glucose-6-phosphate isomerase (GPI) and KCTD15. Some of the other compelling candidate genes in regions associated with meat quality include CEBPA, SNAI1, and FAM132A for IMF, CAPN1 for SSF, GLUL for pH, and PRKAG3 and ITGB1 with cooking loss.

Selection for genetic markers in beef cattle reveals complex associations of thyroglobulin and casein1-s1 with carcass and meat traits.

Abstract: Genetic markers in casein (CSN1S1) and thyroglobulin (TG) genes have previously been associated with fat distribution in cattle. Determining the nature of these genetic associations (additive, recessive, or dominant) has been difficult, because both markers have small minor allele frequencies in most beef cattle populations. This results in few animals homozygous for the minor alleles. selection to increase the frequencies of the minor alleles for 2 SNP markers in these genes was undertaken in a composite population. The objective was to obtain better estimates of genetic effects associated with these markers and determine if there were epistatic interactions. Selection increased the frequencies of minor alleles for both SNP from 0.10). Additive, dominance, and epistatic SNP association effects were estimated from genotypic effects for adjusted fat thickness and predicted meat tenderness. Adjusted fat thickness showed a dominance association with TG SNP (P < 0.06) and an epistatic additive CSN1S1 × additive TG association (P < 0.03). For predicted meat tenderness, heterozygous TG meat was more tender than meat from either homozygote (P < 0.002). Dominance and epistatic associations can result in different SNP allele substitution effects in populations where SNP have the same linkage disequilibrium with causal mutations but have different frequencies. Although the complex associations estimated in this study would contribute little to within-population selection response, they could be important for marker-assisted management or reciprocal selection schemes.

Effects of roughage concentration in dry-rolled corn-based diets containing wet distillers grains with solubles on performance and carcass characteristics of finishing beef steers.

Abstract: Distillers grains and distillers solubles are by-products of grain fermentation used to produce ethanol and contain greater concentrations of NDF and ADF, compared with other grains and concentrates they replace in feedlot diets. Typical finishing diets in the United States contain 8.3% and 9.0% roughage. Therefore, it is plausible that the dietary concentration of roughage can be altered when distillers grains are included in feedlot diets. The effects of roughage concentration in dry-rolled, corn-based diets containing wet distillers grains with solubles (WDGS) were evaluated in steers (n = 128; initial BW = 339 kg), using Calan gates. Each diet was based on dry-rolled corn and contained 25% WDGS with coarsely ground alfalfa hay (AH), replacing corn at 2% (AH-2), 6% (AH-6), 10% (AH-10), and 14% (AH-14) of DM. Feed offered was recorded daily, orts were measured weekly, and BW was measured on d 0, 1, 35, 70, 105, 140, 174, and 175. After commercial harvest and chilling, carcasses were evaluated on-line with a beef carcass grading camera to assess marbling and yield grade traits. The data were analyzed using the Mixed Procedure of SAS, in which contrast statements were used to separate linear and quadratic effects of AH inclusion. Decreasing concentrations of AH in the finishing diet resulted in a tendency for a quadratic response (P = 0.07) in final BW, where BW increased from 2 to 6% AH inclusion but then decreased from 6 to 14% inclusion. Similarly, ADG from d 0 to end responded quadratically (P < 0.01), in which ADG increased from 2 to 6% yet subsequently decreased from 6 to 14% AH inclusion. Dry matter intake from d 0 to end increased linearly (P = 0.02) as AH inclusion increased in the diet, whereas G:F increased from 2 to 6% AH inclusion and then decreased linearly (P < 0.01) from 6 to 14% AH inclusion. Concentration of AH in the finishing diet did not affect HCW, marbling score, or the proportion of cattle grading USDA choice (P ≥ 0.18). However, dressing percent and LM area did respond in a quadratic manner (P < 0.02), in which they decreased from 2 to 10% AH inclusion and increased from 10 to 14% AH in the diet. Yield grade and adjusted 12th rib fat responded quadratically (P < 0.01), in which both increased from 2 to 6% AH inclusion and decreased from 6 to 14% inclusion. Analysis of responses of G:F and ADG on AH predict the apex at 3% and 7% for G:F and ADG, respectively, when fed in diets containing 25% WDGS.