Couplings Between Changes in the Climate System and Biogeochemistry Coordinating Lead Authors: Kenneth L. Denman (Canada), Guy Brasseur (USA, Germany) Lead Authors: Amnat Chidthaisong (Thailand), Philippe Ciais (France), Peter M. Cox (UK), Robert E. Dickinson (USA), Didier Hauglustaine (France), Christoph Heinze (Norway, Germany), Elisabeth Holland (USA), Daniel Jacob (USA, France), Ulrike Lohmann (Switzerland), Srikanthan Ramachandran (India), Pedro Leite da Silva Dias (Brazil), Steven C. Wofsy (USA), Xiaoye Zhang (China) Contributing Authors: D. Archer (USA), V. Arora (Canada), J. Austin (USA), D. Baker (USA), J.A. Berry (USA), R. Betts (UK), G. Bonan (USA), P. Bousquet (France), J. Canadell (Australia), J. Christian (Canada), D.A. Clark (USA), M. Dameris (Germany), F. Dentener (EU), D. Easterling (USA), V. Eyring (Germany), J. Feichter (Germany), P. Friedlingstein (France, Belgium), I. Fung (USA), S. Fuzzi (Italy), S. Gong (Canada), N. Gruber (USA, Switzerland), A. Guenther (USA), K. Gurney (USA), A. Henderson-Sellers (Switzerland), J. House (UK), A. Jones (UK), C. Jones (UK), B. Karcher (Germany), M. Kawamiya (Japan), K. Lassey (New Zealand), C. Le Quere (UK, France, Canada), C. Leck (Sweden), J. Lee-Taylor (USA, UK), Y. Malhi (UK), K. Masarie (USA), G. McFiggans (UK), S. Menon (USA), J.B. Miller (USA), P. Peylin (France), A. Pitman (Australia), J. Quaas (Germany), M. Raupach (Australia), P. Rayner (France), G. Rehder (Germany), U. Riebesell (Germany), C. Rodenbeck (Germany), L. Rotstayn (Australia), N. Roulet (Canada), C. Sabine (USA), M.G. Schultz (Germany), M. Schulz (France, Germany), S.E. Schwartz (USA), W. Steffen (Australia), D. Stevenson (UK), Y. Tian (USA, China), K.E. Trenberth (USA), T. Van Noije (Netherlands), O. Wild (Japan, UK), T. Zhang (USA, China), L. Zhou (USA, China) Review Editors: Kansri Boonpragob (Thailand), Martin Heimann (Germany, Switzerland), Mario Molina (USA, Mexico) This chapter should be cited as: Denman, K.L., G. Brasseur, A. Chidthaisong, P. Ciais, P.M. Cox, R.E. Dickinson, D. Hauglustaine, C. Heinze, E. Holland, D. Jacob, U. Lohmann, S Ramachandran, P.L. da Silva Dias, S.C. Wofsy and X. Zhang, 2007: Couplings Between Changes in the Climate System and Biogeochemistry. In: Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change [Solomon, S., D. Qin, M. Manning, Z. Chen, M. Marquis, K.B. Averyt, M.Tignor and H.L. Miller (eds.)]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA.

/pdf/couplings-between-changes-in-the-climate-system-and-s80hl32kar.pdf

Couplings between changes in the climate system and biogeochemistry

In 1996, version 2.5 of the Coupled Ocean–Atmosphere Response Experiment (COARE) bulk algorithm was published, and it has become one of the most frequently used algorithms in the air–sea interaction community. This paper describes steps taken to improve the algorithm in several ways. The number of iterations to solve for stability has been shortened from 20 to 3, and adjustments have been made to the basic profile stability functions. The scalar transfer coefficients have been redefined in terms of the mixing ratio, which is the fundamentally conserved quantity, rather than the measured water vapor mass concentration. Both the velocity and scalar roughness lengths have been changed. For the velocity roughness, the original fixed value of the Charnock parameter has been replaced by one that increases with wind speeds of between 10 and 18 m s−1. The scalar roughness length parameterization has been simplified to fit both an early set of NOAA/Environmental Technology Laboratory (ETL) experiments and...

/pdf/bulk-parameterization-of-air-sea-fluxes-updates-and-414u3mowml.pdf

Bulk Parameterization of Air–Sea Fluxes: Updates and Verification for the COARE Algorithm

A climatological mean distribution for the surface water pCO2 over the global oceans in non-El Nino conditions has been constructed with spatial resolution of 4° (latitude) ×5° (longitude) for a reference year 2000 based upon about 3 million measurements of surface water pCO2 obtained from 1970 to 2007. The database used for this study is about 3 times larger than the 0.94 million used for our earlier paper [Takahashi et al., 2002. Global sea–air CO2 flux based on climatological surface ocean pCO2, and seasonal biological and temperature effects. Deep-Sea Res. II, 49, 1601–1622]. A time-trend analysis using deseasonalized surface water pCO2 data in portions of the North Atlantic, North and South Pacific and Southern Oceans (which cover about 27% of the global ocean areas) indicates that the surface water pCO2 over these oceanic areas has increased on average at a mean rate of 1.5 μatm y−1 with basin-specific rates varying between 1.2±0.5 and 2.1±0.4 μatm y−1. A global ocean database for a single reference year 2000 is assembled using this mean rate for correcting observations made in different years to the reference year. The observations made during El Nino periods in the equatorial Pacific and those made in coastal zones are excluded from the database.

Seasonal changes in the surface water pCO2 and the sea-air pCO2 difference over four climatic zones in the Atlantic, Pacific, Indian and Southern Oceans are presented. Over the Southern Ocean seasonal ice zone, the seasonality is complex. Although it cannot be thoroughly documented due to the limited extent of observations, seasonal changes in pCO2 are approximated by using the data for under-ice waters during austral winter and those for the marginal ice and ice-free zones.

The net air–sea CO2 flux is estimated using the sea–air pCO2 difference and the air–sea gas transfer rate that is parameterized as a function of (wind speed)2 with a scaling factor of 0.26. This is estimated by inverting the bomb 14C data using Ocean General Circulation models and the 1979–2005 NCEP-DOE AMIP-II Reanalysis (R-2) wind speed data. The equatorial Pacific (14°N–14°S) is the major source for atmospheric CO2, emitting about +0.48 Pg-C y−1, and the temperate oceans between 14° and 50° in the both hemispheres are the major sink zones with an uptake flux of −0.70 Pg-C y−1 for the northern and −1.05 Pg-C y−1 for the southern zone. The high-latitude North Atlantic, including the Nordic Seas and portion of the Arctic Sea, is the most intense CO2 sink area on the basis of per unit area, with a mean of −2.5 tons-C month−1 km−2. This is due to the combination of the low pCO2 in seawater and high gas exchange rates. In the ice-free zone of the Southern Ocean (50°–62°S), the mean annual flux is small (−0.06 Pg-C y−1) because of a cancellation of the summer uptake CO2 flux with the winter release of CO2 caused by deepwater upwelling. The annual mean for the contemporary net CO2 uptake flux over the global oceans is estimated to be −1.6±0.9 Pg-C y−1, which includes an undersampling correction to the direct estimate of −1.4±0.7 Pg-C y−1. Taking the pre-industrial steady-state ocean source of 0.4±0.2 Pg-C y−1 into account, the total ocean uptake flux including the anthropogenic CO2 is estimated to be −2.0±1.0 Pg-C y−1 in 2000.

Climatological mean and decadal change in surface ocean pCO2, and net sea–air CO2 flux over the global oceans

Based on about 940,000 measurements of surface-water pCO2 obtained since the International Geophysical Year of 1956–59, the climatological, monthly distribution of pCO2 in the global surface waters representing mean non-El Nino conditions has been obtained with a spatial resolution of 4°×5° for a reference year 1995. The monthly and annual net sea–air CO2 flux has been computed using the NCEP/NCAR 41-year mean monthly wind speeds. An annual net uptake flux of CO2 by the global oceans has been estimated to be 2.2 (+22% or ?19%) Pg C yr?1 using the (wind speed)2 dependence of the CO2 gas transfer velocity of Wanninkhof (J. Geophys. Res. 97 (1992) 7373). The errors associated with the wind-speed variation have been estimated using one standard deviation (about±2 m s?1) from the mean monthly wind speed observed over each 4°×5° pixel area of the global oceans. The new global uptake flux obtained with the Wanninkhof (wind speed)2 dependence is compared with those obtained previously using a smaller number of measurements, about 250,000 and 550,000, respectively, and are found to be consistent within±0.2 Pg C yr?1. This estimate for the global ocean uptake flux is consistent with the values of 2.0±0.6 Pg C yr?1 estimated on the basis of the observed changes in the atmospheric CO2 and oxygen concentrations during the 1990s (Nature 381 (1996) 218; Science 287 (2000) 2467). However, if the (wind speed)3 dependence of Wanninkhof and McGillis (Res. Lett. 26 (1999) 1889) is used instead, the annual ocean uptake as well as the sensitivity to wind-speed variability is increased by about 70%. A zone between 40° and 60° latitudes in both the northern and southern hemispheres is found to be a major sink for atmospheric CO2. In these areas, poleward-flowing warm waters meet and mix with the cold subpolar waters rich in nutrients. The pCO2 in the surface water is decreased by the cooling effect on warm waters and by the biological drawdown of pCO2 in subpolar waters. High wind speeds over these low pCO2 waters increase the CO2 uptake rate by the ocean waters. The pCO2 in surface waters of the global oceans varies seasonally over a wide range of about 60% above and below the current atmospheric pCO2 level of about 360 ?atm. A global map showing the seasonal amplitude of surface-water pCO2 is presented. The effect of biological utilization of CO2 is differentiated from that of seasonal temperature changes using seasonal temperature data. The seasonal amplitude of surface-water pCO2 in high-latitude waters located poleward of about 40° latitude and in the equatorial zone is dominated by the biology effect, whereas that in the temperate gyre regions is dominated by the temperature effect. These effects are about 6 months out of phase. Accordingly, along the boundaries between these two regimes, they tend to cancel each other, forming a zone of small pCO2 amplitude. In the oligotrophic waters of the northern and southern temperate gyres, the biology effect is about 35 ?atm on average. This is consistent with the biological export flux estimated by Laws et al. (Glob. Biogeochem. Cycles 14 (2000) 1231). Small areas such as the northwestern Arabian Sea and the eastern equatorial Pacific, where seasonal upwelling occurs, exhibit intense seasonal changes in pCO2 due to the biological drawdown of CO2.

Global sea-air CO2 flux based on climatological surface ocean pCO2, and seasonal biological and temperature effects

Contributing Authors D. Archer, M.R. Ashmore, O. Aumont, D. Baker, M. Battle, M. Bender, L.P. Bopp, P. Bousquet, K. Caldeira, P. Ciais, P.M. Cox, W. Cramer, F. Dentener, I.G. Enting, C.B. Field, P. Friedlingstein, E.A. Holland, R.A. Houghton, J.I. House, A. Ishida, A.K. Jain, I.A. Janssens, F. Joos, T. Kaminski, C.D. Keeling, R.F. Keeling, D.W. Kicklighter, K.E. Kohfeld, W. Knorr, R. Law, T. Lenton, K. Lindsay, E. Maier-Reimer, A.C. Manning, R.J. Matear, A.D. McGuire, J.M. Melillo, R. Meyer, M. Mund, J.C. Orr, S. Piper, K. Plattner, P.J. Rayner, S. Sitch, R. Slater, S. Taguchi, P.P. Tans, H.Q. Tian, M.F. Weirig, T. Whorf, A. Yool

/pdf/the-carbon-cycle-and-atmospheric-carbon-dioxide-41bw4t3lwd.pdf

The Carbon Cycle and Atmospheric Carbon Dioxide

A method to estimate net community metabolism (NCM) in natural waters using vertical profiles of water temperature, salinity, dissolved O2, gas tension, and calculated dissolved N2 is presented. The method utilizes the disparate biological activity of dissolved O2 and N2 to estimate metabolism at different depths in the water column. For well-mixed surface waters, N2 saturation levels are assumed to be the result of a quasi steady state balance of net warming or cooling and air–water gas exchange. Dissolved O2 levels are assumed to maintain a similar balance, subject to net biological activity, and NCM is then calculated based on the difference between N2 and O2 saturation levels and the estimated timescale required to equilibrate the layer with the atmosphere. For deeper stratified layers of water that warmed after layer formation in isolation from the atmosphere, the temperature at formation is calculated using the measured N2 concentration and an assumed N2 saturation level of 100% at formation. By assuming that initial N2 and O2 saturation levels were equal, the initial O2 concentration is calculated based on solubility relationships. NCM of the deeper waters is then estimated based on this information and knowledge of the general seasonal heating cycle of the waters. Daily mean water temperature and dissolved gas levels are used in the calculations. The method was assessed using profile measurements collected at Long Pond, Plymouth, Massachusetts, USA, on 23 August 2002. Oxygen was supersaturated relative to N2 by approximately 4% in the 0–6 m deep epilimnion, and undersaturated relative to N2 by approximately 7% in the stratified water at 9 m depth. The estimated 4-day average NCM for the epilimnion was 140 ± 70 mgC m−2day−1. For waters at 9 m depth, the temperature at formation was calculated to be 6.58 °C, and the estimated 100-day average NCM was −2.5 ± 0.6 mgC m−3 day−1. An independent estimate of −4.6 ± 0.9 mgC m−3 day−1 was derived from the measured O2 decline at 9 m depth over the same period of 2003.

A method to estimate net community metabolism from profiles of dissolved O2 and N2

During the GasEx-98 field campaign, observations of the upper ocean structure were performed to identify relationships between the fine thermohaline structure, turbulence, and gas exchange in the near-surface layer of the ocean. The upper ocean dynamics were then simulated using a 1-D mixed layer model with the mixing parameterization developed during TOGA Coupled Ocean-Atmosphere Response Experiment (COARE). The model was initialized with the temperature, salinity, and velocity profiles in the upper 50 m thick layer of the ocean obtained from the Conductivity-Temperature-Depth (CTD) and Acoustic Doppler Current Profiler (ADCP) measurements and was forced with the air-sea heat and momentum fluxes measured by Edson et al. [1999]. The model produced a set of parameters including the time and depth dependent mixing coefficient and the depth of the mixed layer. The simulated mixed layer depth is consistent with the depth of the actively mixed layer determined from the turbulence profiles taken occasionally during GasEx-98 leg 2 with a free-rising profiler. Moderate wind speed conditions prevailed during GasEx-98 leg 2 with several storms and a few periods of calm weather. Both the modeling and experimental results demonstrate that under conditions of low wind speed, the surface-generated turbulence is constrained within a relatively thin surface layer of the ocean. In the near-surface layer, appreciable temperature, salinity, and gas concentration differences are formed because of diurnal warming or precipitation effects. These results are applied to the estimation of the effect of mixed layer processes on the bulk-flux formulation for the air-sea exchange of gases.

Fine Thermohaline Structure and Gas-exchange in the Near-Surface Layer of the Ocean During GasEx-98

Community metabolism in shallow coral reef and seagrass ecosystems, Lower Florida Keys

Author Posting. © Oceanography Society, 2008. This article is posted here by permission of Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 21, 4 (2008): 34-45.

/pdf/investigations-of-air-sea-gas-exchange-in-the-coop-coastal-48sd253m3y.pdf

Investigations of air-sea gas exchange in the CoOP Coastal Air-Sea Chemical Exchange project

Recent laboratory measurements of bulk gas-transfer velocity and free-surface hydrodynamics were made for the case of oscillating grid-stirred turbulence. Air-water gas-transfer velocities were determined from the water-side dissolved oxygen mass balance, and an innovative digital particle image velocimetry technique was used to measure the two-dimensional free-surface flow field. Bulk turbulence was found unable to provide a unique relationship for the gas-transfer rates realized, owing predominantly to surface contamination effects (adventitious and/or purposely introduced films). However, it was found that the surface divergence computed from the free-surface velocity field information was capable of reconciling the gas-transfer data in a physically meaningful way. This appears to be evidence confirming that the free-surface divergence is an important process involved in interfacial gas transport.

Wade R. McGillis

Papers

A method to estimate net community metabolism from profiles of dissolved O2 and N2

Fine Thermohaline Structure and Gas-exchange in the Near-Surface Layer of the Ocean During GasEx-98

Community metabolism in shallow coral reef and seagrass ecosystems, Lower Florida Keys

Investigations of air-sea gas exchange in the CoOP Coastal Air-Sea Chemical Exchange project

Surface Divergence and Air-Water Gas Transfer