Z
Zhengwei Zhu
Researcher at University of California, San Diego
Publications - 9
Citations - 8444
Zhengwei Zhu is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Structural genomics & Relational database. The author has an hindex of 8, co-authored 9 publications receiving 6215 citations. Previous affiliations of Zhengwei Zhu include University of Pennsylvania & University of Kansas.
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Cd-hit
TL;DR: A new CD-HIT program accelerated with a novel parallelization strategy and some other techniques to allow efficient clustering of such datasets to reduce sequence redundancy and improve the performance of other sequence analyses is developed.
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ESEfinder: A web resource to identify exonic splicing enhancers.
TL;DR: ESEfinder (http://exon.cshl.edu/ESE/) is a web-based resource that facilitates rapid analysis of exon sequences to identify putative ESEs responsive to the human SR proteins SF2/ASF, SC35, SRp40 and SRp55, and to predict whether exonic mutations disrupt such elements.
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WebMGA: a customizable web server for fast metagenomic sequence analysis
TL;DR: WebMGA, a customizable web server for fast metagenomic analysis that includes over 20 commonly used tools such as ORF calling, sequence clustering, quality control of raw reads, removal of sequencing artifacts and contaminations, taxonomic analysis, functional annotation etc.
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Templates are available to model nearly all complexes of structurally characterized proteins
TL;DR: It is shown that, surprisingly, in spite of the limited number of protein–protein complexes in the Protein Data Bank, docking templates can be found for complexes representing almost all the knownprotein–protein interactions, provided the components themselves have a known structure or can be homology-built.
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FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes
TL;DR: An efficient algorithm, FR-HIT, was implemented for fragment recruitment, a process of aligning sequencing reads to reference genomes, which recruited significantly more reads than other programs and is about two orders of magnitude faster than BLASTN.