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Journal ArticleDOI

Rapid estimation of elastic constants by molecular dynamics simulation under constant stress

TLDR
In this article, an efficient simulation approach under constant external stress and temperature, modifying Parrinello-Rahman (PR) method using useful sampling techniques developed recently, such as massive Nos\'e-Hoover chain method and hybrid Monte Carlo method, was proposed.
Abstract
Molecular simulations, when they are used to understand properties characterizing the mechanical strength of solid materials, such as stress-strain relation or Born stability criterion, by using elastic constants, are sometimes seriously time consuming. In order to resolve this problem, we propose an efficient simulation approach under constant external stress and temperature, modifying Parrinello-Rahman (PR) method using useful sampling techniques developed recently---massive Nos\'e-Hoover chain method and hybrid Monte Carlo method. Test calculations on the Ni crystal employing the embedded atom method have shown that our method greatly improved the efficiency in sampling the elastic properties compared with the conventional PR method.

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The structure of interfacial water on gold electrodes studied by x-ray absorption spectroscopy

TL;DR: Using x-ray absorption spectroscopy (XAS), the structure of water near gold electrodes and its bias dependence was probed, revealing that the interfacial water molecules have a different structure from those in the bulk.
Journal ArticleDOI

How van der Waals interactions determine the unique properties of water

TL;DR: It is shown that weak van der Waals forces crucially modulate the flexibility of the hydrogen bond network, giving rise to the density maximum in water and causing ice to be less dense than the liquid.
Journal ArticleDOI

On the inner workings of Monte Carlo codes

TL;DR: State-of-the-art Monte Carlo techniques for computing fluid coexistence properties (Gibbs simulations) and adsorption simulations in nanoporous materials such as zeolites and metal–organic frameworks are reviewed.
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Entropy and the driving force for the filling of carbon nanotubes with water

TL;DR: Simulations with structureless coarse-grained water models reveal that the observed free energies and sequence of transitions arise from the tetrahedral structure of liquid water, a broad theoretical basis for understanding water transport through CNTs and other nanostructures important in nanofluidics, nanofiltrations, and desalination.
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Phonon dispersion measured directly from molecular dynamics simulations

TL;DR: It is found that the proposed method is capable of yielding the phonon dispersion accurately, while taking into account the anharmonic effect on phonons simultaneously, and the resultant phonons therefore reflect the finite temperature effect simultaneously.
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