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Allison Scibisz
Researcher at Carnegie Mellon University
Publications - 2
Citations - 103
Allison Scibisz is an academic researcher from Carnegie Mellon University. The author has contributed to research in topics: Approximate string matching & Hardware acceleration. The author has an hindex of 2, co-authored 2 publications receiving 35 citations.
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GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
Damla Senol Cali,Kalsi Gurpreet S,Zülal Bingöl,Can Firtina,Lavanya Subramanian,Jeremie S. Kim,Rachata Ausavarungnirun,Mohammed Alser,Juan Gómez-Luna,Amirali Boroumand,Anant Norion,Allison Scibisz,Sreenivas Subramoneyon,Can Alkan,Saugata Ghose,Onur Mutlu +15 more
TL;DR: GenASM as discussed by the authors accelerates read alignment for both long reads and short reads, with 3.7× the performance of a state-of-the-art pre-alignment filter.
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GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
Damla Senol Cali,Kalsi Gurpreet S,Zülal Bingöl,Can Firtina,Lavanya Subramanian,Jeremie S. Kim,Rachata Ausavarungnirun,Mohammed Alser,Juan Gómez-Luna,Amirali Boroumand,Anant V. Nori,Allison Scibisz,Sreenivas Subramoney,Can Alkan,Saugata Ghose,Onur Mutlu +15 more
TL;DR: GenASM is proposed, the first ASM acceleration framework for genome sequence analysis that accelerates read alignment for both long reads and short reads and accelerates pre-alignment filtering for short reads, and is demonstrated that GenASM provides significant performance and power benefits for three different use cases in genome sequenceAnalysis.