A
Anne Beghin
Researcher at University of Bordeaux
Publications - 6
Citations - 546
Anne Beghin is an academic researcher from University of Bordeaux. The author has contributed to research in topics: Computer science & Biology. The author has an hindex of 3, co-authored 3 publications receiving 382 citations. Previous affiliations of Anne Beghin include Centre national de la recherche scientifique.
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Journal ArticleDOI
SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data
Florian Levet,Eric Hosy,Eric Hosy,Adel Kechkar,Adel Kechkar,Adel Kechkar,Corey Butler,Corey Butler,Anne Beghin,Anne Beghin,Daniel Choquet,Jean-Baptiste Sibarita,Jean-Baptiste Sibarita +12 more
TL;DR: This paper presents a segmentation framework based on Voronoï tessellation constructed from the coordinates of localized molecules, implemented in freely available and open-source SR-Tesseler software, which allows precise, robust and automatic quantification of protein organization at different scales.
Journal ArticleDOI
Localization-based super-resolution imaging meets high-content screening.
Anne Beghin,Anne Beghin,Adel Kechkar,Corey Butler,Corey Butler,Florian Levet,Florian Levet,Marine Cabillic,Marine Cabillic,Olivier Rossier,Olivier Rossier,Grégory Giannone,Grégory Giannone,Rémi Galland,Rémi Galland,Daniel Choquet,Daniel Choquet,Jean-Baptiste Sibarita,Jean-Baptiste Sibarita +18 more
TL;DR: An automated quantitative single-molecule-based super-resolution methodology that operates in standard multiwell plates and uses analysis based on high-content screening and data-mining software.
Journal ArticleDOI
A tessellation-based colocalization analysis approach for single-molecule localization microscopy.
Florian Levet,Guillaume Julien,Guillaume Julien,Rémi Galland,Rémi Galland,Corey Butler,Corey Butler,Anne Beghin,Anne Beghin,Anaël Chazeau,Anaël Chazeau,Philipp Hoess,Jonas Ries,Grégory Giannone,Grégory Giannone,Jean-Baptiste Sibarita,Jean-Baptiste Sibarita +16 more
TL;DR: This work introduces Coloc-Tesseler, a parameter-free colocalisation analysis method based on tessellation analysis for the efficient analysis of multicolour SMLM data and demonstrates its capability to analyze multicolor S MLM data in a robust and efficient manner.
Journal ArticleDOI
Automated high-speed 3D imaging of organoid cultures with multi-scale phenotypic quantification
Anne Beghin,Gianluca Grenci,Geetika Sahni,Su Guo,Harini Rajendiran,Tom Delaire,Saburnisha Binte Mohamad Raffi,Damien Blanc,Richard De Mets,Hui Ting Ong,Xareni Galindo,Anaïs Monet,Vidhyalakshmi Acharya,Victor Racine,Florian Levet,Rémi Galland,Jean-Baptiste Sibarita,Virgile Viasnoff +17 more
TL;DR: JeWells as discussed by the authors is an automated multi-scale 3D imaging platform combining high-density organoid cultures with rapid and live 3D single-objective light-sheet imaging.
Posted ContentDOI
SalienceNet: an unsupervised Image-to-Image translation method for nuclei saliency enhancement in microscopy images
Bouilhol Emmanuel,Edgar Lefevre,Thierno Barry,Florian Levet,Anne Beghin,Virgile Viasnoff,Xareni Galindo,Rémi Galland,Jean-Baptiste Sibarita,Macha Nikolski +9 more
TL;DR: SalienceNet as mentioned in this paper is an unsupervised deep learning-based method that uses the style transfer properties of cycleGAN to transform low-saliency images into high saliency images, thus enabling accurate segmentation by downstream analysis methods, and that without need for any parameter tuning.